1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtattgccatctgctcattcatccgctaacacgcggtatcacgtgagaggcactgacggactttacttattgtttcccacgtgaatttgcagAACGTGAAGGGTGTCTTCGATGCGGCGATAAAGGTTGTGCTGCAGCCGCCTAAGGCGAAGAAGAAGAAAAAGGCGCAGAGGGGGGCGTGCTCCATTTTGT
species | Zea mays |
transcript | GRMZM5G803949_T02 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AGCAAATAGGCGCGCCATACTACATCGAGTGCAGCTCAAAGACCCAACTA AACGTGAAGGGTGTCTTCGATGCGGCGATAAAGGTTGTGCTGCAGCCGCCTEST: gi|37392412|gb|CF633455.1|CF633455
genomic: AGCAAATAGGCGCGCCATACTACATCGAGTGCAGCTCAAAGACCCAACTAgtattgccat ... gaatttgcagAACGTGAAGGGTGTCTTCGATGCGGCGATAAAGGTTGTGCTGCAGCCGCCT
EST: AGCAAATAGGCGCGCCATACTACATCGAGTGCAGCTCAAAGACCCAACTA AACGTGAAGGGTGTCTTCGATGCGGCGATAAAGGTTGTGCTGCAGCCGCCTEST: gi|74240918|gb|DT648832.1|DT648832
genomic: AGCAAATAGGCGCGCCATACTACATCGAGTGCAGCTCAAAGACCCAACTAgtattgccat ... gaatttgcagAACGTGAAGGGTGTCTTCGATGCGGCGATAAAGGTTGTGCTGCAGCCGCCT
EST: AGCAAATAGGCGCGCCATACTACATCGAGTGCAGCTCAAAGACCCAACTA AACGTGAAGGGTGTCTTCGATGCGGCGATAAAGGTTGTGCTGCAGCCGCCTEST: gi|211082361|gb|FK946337.1|FK946337
genomic: AGCAAATAGGCGCGCCATACTACATCGAGTGCAGCTCAAAGACCCAACTAgtattgccat ... gaatttgcagAACGTGAAGGGTGTCTTCGATGCGGCGATAAAGGTTGTGCTGCAGCCGCCT
EST: AGCAAATAGGCGCGCCATACTACATCGAGTGCAGCTCAAAGACCCAACTA AACNGTGAAGGGTGTCTTCGATGCGGCGATAAAGGTTGTGCTGCAGCCGCC
genomic: AGCAAATAGGCGCGCCATACTACATCGAGTGCAGCTCAAAGACCCAACTAgtattgccat ... gaatttgcagAAC-GTGAAGGGTGTCTTCGATGCGGCGATAAAGGTTGTGCTGCAGCCGCC
atcacgtgagaggcactgacggactttacttattgtttcccacgtgaatttgcagAACGTGAAGGGTGTCTTCGATGCGGCGATAAAGGTTGTGCTGCAGCCGCCTAAGGCGAAGAAGAAGAAAAAGGCGCAGAGGGGGGCGTGCTCCATTTTGT
cactgac putative branch site (score: 2)
tttacttattgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattgccatctgctcattcatccgctaacacgcggtatcacgtgagaggcactgacggactttacttattgtttcccacgtgaatttgcagAACGTGAAGGGTGTCTTCGATGCGGCGATAAAGGTTGTGCTGCAGCCGCCTAAGGCGAAGAAGAAGAAAAAGGCGCAGAGGGGGGCGTGCTCCATTTTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA