Sequence
atgc intronic sequence ATGC exonic sequence...ttttagtttcacagcgtcagaagtttctctctctgtctctcaggtctcttttgctttgttgtgcaatgcttttgtaataatgcgttgttgcacatggcagGTGATGTTGGTGCTTTGGGCTGGTGGGATTTGTTTATAAATTATGG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G704032_T01 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os03g49900.1 (Oryza sativa), 3'ss of exon 6
--------ttttag-tttcacagcgtcagaagtttctctctctgtctctcaggtctcttttgctttgttgtgcaatgcttttgtaataatgcgttgttgcacatggcagGTGATGTTGGTGCTTTGGGCTGGTGGGATTTGTTTATAAATTATGG
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gcaaactatcttagattgtacaatattc-aggtttttatttctct---tcggcctaattttcctctactctgaaatg-ttttgtgatatta--ttattgca--tgacagGTGATGTTGGTGCTTTGGGATGGTGGGATTTGTTTATAAATTATGG
upper sequence: GRMZM2G704032_T01 (Zea mays), 3'ss of exon 6
lower sequence: GLYMA17G13040.1 (Glycine max), 3'ss of exon 6
ttttagtttcacagcgtcagaagtttctc-tctctgtctctcaggtctcttttgctttgttgtgcaatgcttttgtaa-taatgcgttgtt------gcacatggcagGTGATGTTGGTGCTTTGGGCTGGTGGGATTTGTTTATAAATTATGG
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-------aatacagtttggttactcttgcatttatatgtctaagatattttattcat-atgatgtcgtctttctataagtaaggcttcatttttcttgtctattacagGTGATGTAGGTGCTCTGGGCTGGTGGGACTTGTTTATTAATTTTGC
upper sequence: GRMZM2G704032_T01 (Zea mays), 3'ss of exon 6
lower sequence: GLYMA05G07960.1 (Glycine max), 3'ss of exon 6
ttttagtttcaca-gcgtcagaagtttctctctctgtctctcaggtctcttttgctttgttgtgcaatgcttttgtaa-taatgcgttgttgcacatg------gcagGTGATGTTGGTGCTTTGGGCTGGTGGGATTTGTTTATAAATTATGG
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-------ctaatacattttggttactcttgcatttatgtctaagatattttattctt-atgatttcatctttctataagtaaggcttcatttttcttgtctaatacagGTGATGTAGGTGCTCTGGGCTGGTGGGACTTGTTTATTAATTTTATMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211285783|gb|FL373361.1|FL373361EST: AATGGTGTTTCTTATAGCTGCTACAACATTCACCCTTCTCAAGCTGTCTG GTGATGTTGGTGCTTTGGGCTGGTGGGATTTGTTTATAAATTGATGG
genomic: AATGGTGTTTCTTATAGCTGCTACAACATTCACCCTTCTCAAGCTGTCTGgtaagtttcc ... cacatggcagGTGATGTTGGTGCTTTGGGCTGGTGGGATTTGTTTATAAATT-ATGG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctcttttgctttgttgtgcaatgcttttgtaataatgcgttgttgcacatggcagGTGATGTTGGTGCTTTGGGCTGGTGGGATTTGTTTATAAATTATGG
ttttgtaataat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttttagtttcacagcgtcagaagtttctctctctgtctctcaggtctcttttgctttgttgtgcaatgcttttgtaataatgcgttgttgcacatggcagGTGATGTTGGTGCTTTGGGCTGGTGGGATTTGTTTATAAATTATGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcaatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gttgttg