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gtgggaatcaatatgttcagaactcagatggtttcctgcaaatatgtaccgagaaaaatattttgtataatgctgtttttctgtagttgtgatgatttagttttttgtgaacagGATGCTCTGCAGATACTGGCTTGCAAGGAGATGCGCATCCACCCCAACATCTTATCAGAGAATTCCGAGATGGACGAGGAAGGCGGTGAGGGCGGAGGAA
species | Zea mays |
transcript | GRMZM2G571844_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GCGATGGCTTGCTCAGTGTTGATGATGCTGGTGGAAGGGCTGTACTTCAG GATGCTCTGCAGATACTGGCTTGCAAGGAGATGCGCATCCACCCCAACATCEST: gi|26559311|gb|CA831546.1|CA831546
genomic: GCGATGGCTTGCTCAGTGTTGATGATGCTGGTGGAAGGGCTGTACTTCAGgtgggaatca ... ttgtgaacagGATGCTCTGCAGATACTGGCTTGCAAGGAGATGCGCATCCACCCCAACATC
EST: GCGATGGCTTGCTCAGTGTTGATGATGCTGGTGGAAGGGCTGTACTTCAG GATGCTCTGCAGATACTGGCTTGCAAGGAGATGCGCATCCACCCCAACATCEST: gi|149089805|gb|EE179081.2|EE179081
genomic: GCGATGGCTTGCTCAGTGTTGATGATGCTGGTGGAAGGGCTGTACTTCAGgtgggaatca ... ttgtgaacagGATGCTCTGCAGATACTGGCTTGCAAGGAGATGCGCATCCACCCCAACATC
EST: GCGATGGCTTGCTCAGTGTTGATGATGCTGGTGGAAGGGCTGTACTTCAG GATGCTCTGCAGATACTGGCTTTGCA-GGAGATGCGCATCCACCCCAACATEST: gi|89106825|gb|DY577042.1|DY577042
genomic: GCGATGGCTTGCTCAGTGTTGATGATGCTGGTGGAAGGGCTGTACTTCAGgtgggaatca ... ttgtgaacagGATGCTCTGCAGATACTGGCTT-GCAAGGAGATGCGCATCCACCCCAACAT
EST: GCGATGGCTTGCTCAGTGTTGATGATGCTGGTGGAAGGGCTGTACTTCAG GATGCTCTGCAGATACTGGCTTGCAAGGAGATGCGCATCCACCCCAACATC
genomic: GCGATGGCTTGCTCAGTGTTGATGATGCTGGTGGAAGGGCTGTACTTCAGgtgggaatca ... ttgtgaacagGATGCTCTGCAGATACTGGCTTGCAAGGAGATGCGCATCCACCCCAACATC
attttgtataatgctgtttttctgtagttgtgatgatttagttttttgtgaacagGATGCTCTGCAGATACTGGCTTGCAAGGAGATGCGCATCCACCCCAACATCTTATCAGAGAATTCCGAGATGGACGAGGAAGGCGGTGAGGGCGGAGGAA
ttttttgt CT-rich tract
atgatttagtttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgggaatcaatatgttcagaactcagatggtttcctgcaaatatgtaccgagaaaaatattttgtataatgctgtttttctgtagttgtgatgatttagttttttgtgaacagGATGCTCTGCAGATACTGGCTTGCAAGGAGATGCGCATCCACCCCAACATCTTATCAGAGAATTCCGAGATGGACGAGGAAGGCGGTGAGGGCGGAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA