1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtgagatccgattcttatgtacatatagatgtgcataaatagtgttcagatcgctcatcttctctgcatatcattggtgaaaattgtgtatggtagattgttactaaattgttcagtttgctattcatcaatcttatagGCAAGCGCGAGTGTGTCTCCCACACTATGGCAACCACCAAGTGGCATTTTGATGACTAATGACACGACTGACAACAATCCTGAAGAAGCTGTTCACTGCT
species | Zea mays |
transcript | GRMZM2G550865_T02 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CTGTTCATCTACTCTGGAAATGGCCACGCAGTGATCGGAATTCTGGAAAG GCAAGCGCGAGTGTGTCTCCCACACTATGGCAACCACCAAGTGGCATTTTGEST: gi|74236788|gb|DT644702.1|DT644702
genomic: CTGTTCATCTACTCTGGAAATGGCCACGCAGTGATCGGAATTCTGGAAAGgtgagatccg ... aatcttatagGCAAGCGCGAGTGTGTCTCCCACACTATGGCAACCACCAAGTGGCATTTTG
EST: CTGTTCATCTACTCTGGAAATGGCCACGCAGTGATCGGAATTCTGGAAAG GCAAGCGCGAGTGTGTCTCCCACACTATGGCAACCACCAAGTGGCATTTTGEST: gi|18963627|gb|BM660541.1|BM660541
genomic: CTGTTCATCTACTCTGGAAATGGCCACGCAGTGATCGGAATTCTGGAAAGgtgagatccg ... aatcttatagGCAAGCGCGAGTGTGTCTCCCACACTATGGCAACCACCAAGTGGCATTTTG
EST: CTGTTCATCTACTCTGGAAATGGCCACGCAGTGATCGGAATTCTGGAAAG GCAAGCGCGAGTGTGTCTCCCACACTATGGCAACCACCAAGTGGCATTTTGEST: gi|19058178|gb|BM736845.1|BM736845
genomic: CTGTTCATCTACTCTGGAAATGGCCACGCAGTGATCGGAATTCTGGAAAGgtgagatccg ... aatcttatagGCAAGCGCGAGTGTGTCTCCCACACTATGGCAACCACCAAGTGGCATTTTG
EST: CTGTTCATCTACTCTGGAAATGGCCACGCAGTGATCGGAATTCTGGAAAG GCAAGCGCGAGTGTGTCTCCCACACTATGGCAACCACCAAGTGGCATTTTGEST: gi|87152018|gb|DY396807.1|DY396807
genomic: CTGTTCATCTACTCTGGAAATGGCCACGCAGTGATCGGAATTCTGGAAAGgtgagatccg ... aatcttatagGCAAGCGCGAGTGTGTCTCCCACACTATGGCAACCACCAAGTGGCATTTTG
EST: CTGTTCATCTACTCTGGAAATGGCCACGCAGTGATCGGAATTCTGGAAAG GCAAGCGCGAGTGTGTCTCCCACACTATGGCAACCACCAAGTGGCATTTTGEST: gi|32858467|gb|CD998148.1|CD998148
genomic: CTGTTCATCTACTCTGGAAATGGCCACGCAGTGATCGGAATTCTGGAAAGgtgagatccg ... aatcttatagGCAAGCGCGAGTGTGTCTCCCACACTATGGCAACCACCAAGTGGCATTTTG
EST: CTGTTCATCTACTCTGGAAATGGCCACGCAGTGATCGGAATTCTGGAAAG GCAAGCGCGAGTGTGTCTCCCACACTATGGCAACCACCAAGTGGCATTTTG
genomic: CTGTTCATCTACTCTGGAAATGGCCACGCAGTGATCGGAATTCTGGAAAGgtgagatccg ... aatcttatagGCAAGCGCGAGTGTGTCTCCCACACTATGGCAACCACCAAGTGGCATTTTG
tgtgtatggtagattgttactaaattgttcagtttgctattcatcaatcttatagGCAAGCGCGAGTGTGTCTCCCACACTATGGCAACCACCAAGTGGCATTTTGATGACTAATGACACGACTGACAACAATCCTGAAGAAGCTGTTCACTGCT
tactaaa putative branch site (score: 1)
attgttactaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagatccgattcttatgtacatatagatgtgcataaatagtgttcagatcgctcatcttctctgcatatcattggtgaaaattgtgtatggtagattgttactaaattgttcagtttgctattcatcaatcttatagGCAAGCGCGAGTGTGTCTCCCACACTATGGCAACCACCAAGTGGCATTTTGATGACTAATGACACGACTGACAACAATCCTGAAGAAGCTGTTCACTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT