1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gttcccttatttaatagtattattttgtttcaacgctattgtggaagatcaaactgttaggtttattttgtttaaaatttgtagtggataatgatttgatttggaatatttcagGCAGCAGATTATCTTGAGCAGGCTGAGTACAATACTGGCAATCCTGAAGATGACTTGAAAACAGAATCTCTTGTGAAGCAATTGCTTTACAATTCCCAGT
species | Zea mays |
transcript | GRMZM2G521844_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TCCAGAATCTATACTTCACCTACCTGTTTGTTCTTCGAGCCGTGACAAAG GCAGCAGATTATCTTGAGCAGGCTGAGTACAATACTGGCAATCCTGAAGATEST: gi|91057154|gb|EB167572.1|EB167572
genomic: TCCAGAATCTATACTTCACCTACCTGTTTGTTCTTCGAGCCGTGACAAAGgttcccttat ... aatatttcagGCAGCAGATTATCTTGAGCAGGCTGAGTACAATACTGGCAATCCTGAAGAT
EST: TCCAGAATCTATACTTCACCTACCTGTTTGTTCTTCGAGCCGTGACAAAG GCAGCAGATTATCTTGAGCAGGCTGAGTACAATACTGGCAATCCTGAAGAT
genomic: TCCAGAATCTATACTTCACCTACCTGTTTGTTCTTCGAGCCGTGACAAAGgttcccttat ... aatatttcagGCAGCAGATTATCTTGAGCAGGCTGAGTACAATACTGGCAATCCTGAAGAT
ggtttattttgtttaaaatttgtagtggataatgatttgatttggaatatttcagGCAGCAGATTATCTTGAGCAGGCTGAGTACAATACTGGCAATCCTGAAGATGACTTGAAAACAGAATCTCTTGTGAAGCAATTGCTTTACAATTCCCAGT
atttgat putative branch site (score: 40)
attttgtttaaaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcccttatttaatagtattattttgtttcaacgctattgtggaagatcaaactgttaggtttattttgtttaaaatttgtagtggataatgatttgatttggaatatttcagGCAGCAGATTATCTTGAGCAGGCTGAGTACAATACTGGCAATCCTGAAGATGACTTGAAAACAGAATCTCTTGTGAAGCAATTGCTTTACAATTCCCAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA