Sequence
atgc intronic sequence ATGC exonic sequence...actaacaaaccactgtgcttatcttgtaacatattaattactatctctgaagattcaggacaaggaaaaaagatcatcacatagtctactagtgttgcagTTTCCTTTGCCACTGAAGAAGCAACTTGTGGATGATTGGGAGTTTGTTACGCAGATGG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G484880_T05 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os11g34300.2 (Oryza sativa), 3'ss of exon 6
-------------------------------------actaacaaaccactgtgct---tatcttgtaacatattaattactat-ctctgaa-gattcaggacaaggaaaaaagatcatcacatagtctactagtgttgcagTTTCCTTTGCCACTGAAGAAGCAACTTGTGGATGATTGGGAGTTTGTTACGCAGATGG
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tcagctatatttggcaagcatgtggtagatcattttatctatcaagttgttttgtggtatatttgtaaacataatgacaactctgccctggttgatccagGAGAAAGAAAGAAAATCATCTGAGAGTCTCTTCATGTCACATTTTCCTTCAACGCTAAAAAAGCAACTTGTTGATGATTGGGAGTTTGTCACGCAGCTGG
upper sequence: GRMZM2G484880_T05 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os04g01130.1 (Oryza sativa), 3'ss of exon 5
-------------------------------------actaacaaaccactgtg---cttatcttgtaacatattaattactat-ctctgaa-gattcaggacaaggaaaaaagatcatcacatagtctactagtgttgcagTTTCCTTTGCCACTGAAGAAGCAACTTGTGGATGATTGGGAGTTTGTTACGCAGATGG
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tcagctatatttggcaatcatatggtagaacattttatctatcaagttttcttgtgacatatttgtaaacatagtgacaactctgccctgtttgatccagGAGAAAGAAAGAAAATCATCTGAGAGTCTCTTCATGTCACATTTTCCTTCAACACTAAAAAAACAACTTGTTGATGATTGGGAGTTTGTCACGCAGCTGG
upper sequence: GRMZM2G484880_T05 (Zea mays), 3'ss of exon 6
lower sequence: Vv07s0129g01020.t01 (Vitis vinifera), 3'ss of exon 6
----------------------------------------actaacaaaccactgtgcttatcttg-taacatattaattactatctctgaagattcaggacaaggaaaaaagatcatcacatagtctactagtgttgcagTTTCCTTTGCCACTGAAGAAGCAACTTGTGGATGATTGGGAGTTTGTTACGCAGATGG---
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cattcataaactgttcaatattttgctttgctttttttagggctgttaacca--gggttgattttgatagttaagcgctaagtgtggttttatatttgttagAAGGACAATGCATCAACAGAAAAGCTTGTCAAGATCCCAATTCCAGCGACACTAAAGAAGCAACTTGTTGATGATTGGGATTTTGTTACTCAGCAGGATAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|60343282|gb|DN210255.1|DN210255EST: AGAAACGTAAAAGTCAGCTTGGGACTGAG TTTCCTTTGCCACTGAAGAAGCAACTTGTGGATGATTGGGAGTTTGTTACG
genomic: AGAAACGTAAAAGTCAGCTTGGGACTGAGgtgactttaa ... agtgttgcagTTTCCTTTGCCACTGAAGAAGCAACTTGTGGATGATTGGGAGTTTGTTACG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tctgaagattcaggacaaggaaaaaagatcatcacatagtctactagtgttgcagTTTCCTTTGCCACTGAAGAAGCAACTTGTGGATGATTGGGAGTTTGTTACGCAGATGG
aaaaaagat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
actaacaaaccactgtgcttatcttgtaacatattaattactatctctgaagattcaggacaaggaaaaaagatcatcacatagtctactagtgttgcagTTTCCTTTGCCACTGAAGAAGCAACTTGTGGATGATTGGGAGTTTGTTACGCAGATGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG