1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...caaaattcaatgttttagctatctgctttagcaaattaagagactaacaaaccactgtgcttatcttgtaacatattaattactatctctgaagattcagGACAAGGAAAAAAGATCATCACATAGTCTACTAGTGTTGCAGTTTCCTTTGCCACTGAAGAAGCAACTTGTGGATGATTGGGAGTTTGTTACGCAGATGG
species | Zea mays |
transcript | GRMZM2G484880_T02 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTTCAGTGAAGGGGAAGAAACGTAAAAGTCAGCTTGGGACTGAG AEST: gi|26456042|gb|CA827625.1|CA827625
genomic: TTTCAGTGAAGGGGAAGAAACGTAAAAGTCAGCTTGGGACTGAGgtgactttaa ... gaagattcag-
EST: TTTCAGTGAAGGGGAAGAAACGTAAAAGTCAGCTTGGGACTGAG AEST: gi|26456042|gb|CA827625.1|CA827625
genomic: TTTCAGTGAAGGGGAAGAAACGTAAAAGTCAGCTTGGGACTGAGgtgactttaa ... gaagattcag-
EST: TTTCAGTGAAGGGGAAGAAACGTAAAAGTCAGCTTGGGACTGAG AEST: gi|26456042|gb|CA827625.1|CA827625
genomic: TTTCAGTGAAGGGGAAGAAACGTAAAAGTCAGCTTGGGACTGAGgtgactttaa ... gaagattcag-
EST: TTTCAGTGAAGGGGAAGAAACGTAAAAGTCAGCTTGGGACTGAG AEST: gi|26456042|gb|CA827625.1|CA827625
genomic: TTTCAGTGAAGGGGAAGAAACGTAAAAGTCAGCTTGGGACTGAGgtgactttaa ... gaagattcag-
EST: TTTCAGTGAAGGGGAAGAAACGTAAAAGTCAGCTTGGGACTGAG AEST: gi|26456042|gb|CA827625.1|CA827625
genomic: TTTCAGTGAAGGGGAAGAAACGTAAAAGTCAGCTTGGGACTGAGgtgactttaa ... gaagattcag-
EST: TTTCAGTGAAGGGGAAGAAACGTAAAAGTCAGCTTGGGACTGAG AEST: gi|32865668|gb|CF005350.1|CF005350
genomic: TTTCAGTGAAGGGGAAGAAACGTAAAAGTCAGCTTGGGACTGAGgtgactttaa ... gaagattcag-
EST: TTTCAGTGAAGGGGAAGAAACGTAAAAGTCAGCTTGGGACTGAG AEST: gi|32865668|gb|CF005350.1|CF005350
genomic: TTTCAGTGAAGGGGAAGAAACGTAAAAGTCAGCTTGGGACTGAGgtgactttaa ... gaagattcag-
EST: TTTCAGTGAAGGGGAAGAAACGTAAAAGTCAGCTTGGGACTGAG AEST: gi|32865668|gb|CF005350.1|CF005350
genomic: TTTCAGTGAAGGGGAAGAAACGTAAAAGTCAGCTTGGGACTGAGgtgactttaa ... gaagattcag-
EST: TTTCAGTGAAGGGGAAGAAACGTAAAAGTCAGCTTGGGACTGAG AEST: gi|32865668|gb|CF005350.1|CF005350
genomic: TTTCAGTGAAGGGGAAGAAACGTAAAAGTCAGCTTGGGACTGAGgtgactttaa ... gaagattcag-
EST: TTTCAGTGAAGGGGAAGAAACGTAAAAGTCAGCTTGGGACTGAG AEST: gi|32865668|gb|CF005350.1|CF005350
genomic: TTTCAGTGAAGGGGAAGAAACGTAAAAGTCAGCTTGGGACTGAGgtgactttaa ... gaagattcag-
EST: TTTCAGTGAAGGGGAAGAAACGTAAAAGTCAGCTTGGGACTGAG AEST: gi|32865668|gb|CF005350.1|CF005350
genomic: TTTCAGTGAAGGGGAAGAAACGTAAAAGTCAGCTTGGGACTGAGgtgactttaa ... gaagattcag-
EST: TTTCAGTGAAGGGGAAGAAACGTAAAAGTCAGCTTGGGACTGAG AEST: gi|211058547|gb|FK994412.1|FK994412
genomic: TTTCAGTGAAGGGGAAGAAACGTAAAAGTCAGCTTGGGACTGAGgtgactttaa ... gaagattcag-
EST: TTTCAGTGAAGGGGAAGAAACGTAAAAGTCAGCTTGGGACTGAG AEST: gi|211058547|gb|FK994412.1|FK994412
genomic: TTTCAGTGAAGGGGAAGAAACGTAAAAGTCAGCTTGGGACTGAGgtgactttaa ... gaagattcag-
EST: TTTCAGTGAAGGGGAAGAAACGTAAAAGTCAGCTTGGGACTGAG AEST: gi|211058547|gb|FK994412.1|FK994412
genomic: TTTCAGTGAAGGGGAAGAAACGTAAAAGTCAGCTTGGGACTGAGgtgactttaa ... gaagattcag-
EST: TTTCAGTGAAGGGGAAGAAACGTAAAAGTCAGCTTGGGACTGAG AEST: gi|211058547|gb|FK994412.1|FK994412
genomic: TTTCAGTGAAGGGGAAGAAACGTAAAAGTCAGCTTGGGACTGAGgtgactttaa ... gaagattcag-
EST: TTTCAGTGAAGGGGAAGAAACGTAAAAGTCAGCTTGGGACTGAG AEST: gi|211058547|gb|FK994412.1|FK994412
genomic: TTTCAGTGAAGGGGAAGAAACGTAAAAGTCAGCTTGGGACTGAGgtgactttaa ... gaagattcag-
EST: TTTCAGTGAAGGGGAAGAAACGTAAAAGTCAGCTTGGGACTGAG AEST: gi|6031476|gb|AW076378.1|AW076378
genomic: TTTCAGTGAAGGGGAAGAAACGTAAAAGTCAGCTTGGGACTGAGgtgactttaa ... gaagattcag-
EST: TTTCAGTGAAGGGGAAGAAACGTAAAAGTCAGCTTGGGACTGAG AEST: gi|6031476|gb|AW076378.1|AW076378
genomic: TTTCAGTGAAGGGGAAGAAACGTAAAAGTCAGCTTGGGACTGAGgtgactttaa ... gaagattcag-
EST: TTTCAGTGAAGGGGAAGAAACGTAAAAGTCAGCTTGGGACTGAG AEST: gi|6031476|gb|AW076378.1|AW076378
genomic: TTTCAGTGAAGGGGAAGAAACGTAAAAGTCAGCTTGGGACTGAGgtgactttaa ... gaagattcag-
EST: TTTCAGTGAAGGGGAAGAAACGTAAAAGTCAGCTTGGGACTGAG AEST: gi|6031476|gb|AW076378.1|AW076378
genomic: TTTCAGTGAAGGGGAAGAAACGTAAAAGTCAGCTTGGGACTGAGgtgactttaa ... gaagattcag-
EST: TTTCAGTGAAGGGGAAGAAACGTAAAAGTCAGCTTGGGACTGAG AEST: gi|6031476|gb|AW076378.1|AW076378
genomic: TTTCAGTGAAGGGGAAGAAACGTAAAAGTCAGCTTGGGACTGAGgtgactttaa ... gaagattcag-
EST: TTTCAGTGAAGGGGAAGAAACGTAAAAGTCAGCTTGGGACTGAG AEST: gi|6031476|gb|AW076378.1|AW076378
genomic: TTTCAGTGAAGGGGAAGAAACGTAAAAGTCAGCTTGGGACTGAGgtgactttaa ... gaagattcag-
EST: TTTCAGTGAAGGGGAAGAAACGTAAAAGTCAGCTTGGGACTGAG AEST: gi|76912438|gb|DV164732.1|DV164732
genomic: TTTCAGTGAAGGGGAAGAAACGTAAAAGTCAGCTTGGGACTGAGgtgactttaa ... gaagattcag-
EST: TTTCAGTGAAGGGGAAGAAACGTAAAAGTCAGCTTGGGACTGAG GACAAGGAAAAAAGATCATCACATAGTCTACTAGTGTTGCAGTTTCCTTTGEST: gi|71438521|gb|DR819571.1|DR819571
genomic: TTTCAGTGAAGGGGAAGAAACGTAAAAGTCAGCTTGGGACTGAGgtgactttaa ... gaagattcagGACAAGGAAAAAAGATCATCACATAGTCTACTAGTGTTGCAGTTTCCTTTG
EST: TTTCAGTGAAGGGGAAGAAACGTAAAAGTCAGCTTGGGACTGAGATTCAGEST: gi|93284203|gb|EB676467.1|EB676467
genomic: TTTCAGTGAAGGGGAAGAAACGTAAAAGTCAGCTTGGGACT--G----AGgtgactttaa ... gaaga
EST: TTTCAGTGAAGGGGAAGAAACGTAAAAGTCAGCCTGGGGACGGAG GACAAG-AAAAAEST: gi|71434326|gb|DR815376.1|DR815376
genomic: TTTCAGTGAAGGGGAAGAAACGTAAAAGTCAGCTTGGG-ACTGAGgtgactttaa ... gaagattcagGACAAGGAAAAA
EST: TTTCAGTGAAGGGGAAAGAAACGTAAAAGTCCAGCTTGGGACTGAG AEST: gi|71434326|gb|DR815376.1|DR815376
genomic: TTTCAGTGAAGGGGAA-GAAACGTAAAAGTC-AGCTTGGGACTGAGgtgactttaa ... gaagattcag-
EST: TTTCAGTGAAGGGGAAAGAAACGTAAAAGTCCAGCTTGGGACTGAG AEST: gi|71434326|gb|DR815376.1|DR815376
genomic: TTTCAGTGAAGGGGAA-GAAACGTAAAAGTC-AGCTTGGGACTGAGgtgactttaa ... gaagattcag-
EST: TTTCAGTGAAGGGGAAAGAAACGTAAAAGTCCAGCTTGGGACTGAG AEST: gi|71434326|gb|DR815376.1|DR815376
genomic: TTTCAGTGAAGGGGAA-GAAACGTAAAAGTC-AGCTTGGGACTGAGgtgactttaa ... gaagattcag-
EST: TTTCAGTGAAGGGGAAAGAAACGTAAAAGTCCAGCTTGGGACTGAG AEST: gi|71434326|gb|DR815376.1|DR815376
genomic: TTTCAGTGAAGGGGAA-GAAACGTAAAAGTC-AGCTTGGGACTGAGgtgactttaa ... gaagattcag-
EST: TTTCAGTGAAGGGGAAAGAAACGTAAAAGTCCAGCTTGGGACTGAG AEST: gi|71434326|gb|DR815376.1|DR815376
genomic: TTTCAGTGAAGGGGAA-GAAACGTAAAAGTC-AGCTTGGGACTGAGgtgactttaa ... gaagattcag-
EST: TTTCAGTGAAGGGGAAAGAAACGTAAAAGTCCAGCTTGGGACTGAG AEST: gi|76016791|gb|DT943961.1|DT943961
genomic: TTTCAGTGAAGGGGAA-GAAACGTAAAAGTC-AGCTTGGGACTGAGgtgactttaa ... gaagattcag-
EST: GGAAGAAACGTAAAAGTCAGCTTGGGACTGAGATTCAGEST: gi|71331879|gb|DR802817.1|DR802817
genomic: GGAAGAAACGTAAAAGTCAGCTTGGGACT--G----AGgtgactttaa ... gaaga
EST: TTTCAGTGAAGGGGAAGAAACGTAAAAGTCAGCTTGGGACTGAG AEST: gi|71331879|gb|DR802817.1|DR802817
genomic: TTTCAGTGAAGGGGAAGAAACGTAAAAGTCAGCTTGGGACTGAGgtgactttaa ... gaagattcag-
EST: TTTCAGTGAAGGGGAAGAAACGTAAAAGTCAGCTTGGGACTGAG AEST: gi|71331879|gb|DR802817.1|DR802817
genomic: TTTCAGTGAAGGGGAAGAAACGTAAAAGTCAGCTTGGGACTGAGgtgactttaa ... gaagattcag-
EST: TTTCAGTGAAGGGGAAGAAACGTAAAAGTCAGCTTGGGACTGAG AEST: gi|71331879|gb|DR802817.1|DR802817
genomic: TTTCAGTGAAGGGGAAGAAACGTAAAAGTCAGCTTGGGACTGAGgtgactttaa ... gaagattcag-
EST: TTTCAGTGAAGGGGAAGAAACGTAAAAGTCAGCTTGGGACTGAG AEST: gi|71331879|gb|DR802817.1|DR802817
genomic: TTTCAGTGAAGGGGAAGAAACGTAAAAGTCAGCTTGGGACTGAGgtgactttaa ... gaagattcag-
EST: TTTCAGTGAAGGGGAAGAAACGTAAAAGTCAGCTTGGGACTGAG AEST: gi|71331879|gb|DR802817.1|DR802817
genomic: TTTCAGTGAAGGGGAAGAAACGTAAAAGTCAGCTTGGGACTGAGgtgactttaa ... gaagattcag-
EST: TTTCAGTGAAGGGGAAGAAACGTAAAAGTCAGCTTGGGACTGAG A
genomic: TTTCAGTGAAGGGGAAGAAACGTAAAAGTCAGCTTGGGACTGAGgtgactttaa ... gaagattcag-
aacaaaccactgtgcttatcttgtaacatattaattactatctctgaagattcagGACAAGGAAAAAAGATCATCACATAGTCTACTAGTGTTGCAGTTTCCTTTGCCACTGAAGAAGCAACTTGTGGATGATTGGGAGTTTGTTACGCAGATGG
ttatcttgtaacatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caaaattcaatgttttagctatctgctttagcaaattaagagactaacaaaccactgtgcttatcttgtaacatattaattactatctctgaagattcagGACAAGGAAAAAAGATCATCACATAGTCTACTAGTGTTGCAGTTTCCTTTGCCACTGAAGAAGCAACTTGTGGATGATTGGGAGTTTGTTACGCAGATGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - ctgcttt
- - - - - - - - - - - - - - - - - - - - - - taacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - -ccactgt