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gtgggttttaatactattctatgaatattttcatcataggcaattaaacttttgagtttagctaacgacagctttattactgtctgcagCTATCTGGCTCCTGAATATGCACAGAGTGGGCAAATAACAGAGAAGGCTGATGTATACTCTTTCGGGGTTGTGTTAGTGGAACTTGTCACTGGGCGGAAG
species | Zea mays |
transcript | GRMZM2G480607_T06 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CAACCCGATGGAGACATGGGCGTTGAAACAAGAGTTATCGGCACATTCGG CTATCTGGCTCCTGAATATGCACAGAGTGGGCAAATAACAGAGAAGGCTGAEST: gi|32809375|gb|CD961609.1|CD961609
genomic: CAACCCGATGGAGACATGGGCGTTGAAACAAGAGTTATCGGCACATTCGGgtgggtttta ... ctgtctgcagCTATCTGGCTCCTGAATATGCACAGAGTGGGCAAATAACAGAGAAGGCTGA
EST: CAACCTGATGGAGACATGGGCGTTGAAACAAGAGTTATCGGCACATTCGG CTATCTGGCTCCTGAATATGCACAGAGTGGGCAAATAACAGAGAAGGCTGAEST: gi|29129926|gb|CB380630.1|CB380630
genomic: CAACCCGATGGAGACATGGGCGTTGAAACAAGAGTTATCGGCACATTCGGgtgggtttta ... ctgtctgcagCTATCTGGCTCCTGAATATGCACAGAGTGGGCAAATAACAGAGAAGGCTGA
EST: CAACCCGATGGAGACATGGGCGTTGAAACAAGAGTTATCGGCACATTCGG CTATCTGGCTCCTGAATATGCACAGAGTGGGCAAATAACAGAGAAGGCTGAEST: gi|32827128|gb|CD966806.1|CD966806
genomic: CAACCCGATGGAGACATGGGCGTTGAAACAAGAGTTATCGGCACATTCGGgtgggtttta ... ctgtctgcagCTATCTGGCTCCTGAATATGCACAGAGTGGGCAAATAACAGAGAAGGCTGA
EST: CAACCTGATGGAGACATGGGCGTTGAAACAAGAGTTATCGGCACATTCGG CTATCTGGCTCCTGAATATGCACAGAGTGGGCAAATAACAGAGAAGGCTGA
genomic: CAACCCGATGGAGACATGGGCGTTGAAACAAGAGTTATCGGCACATTCGGgtgggtttta ... ctgtctgcagCTATCTGGCTCCTGAATATGCACAGAGTGGGCAAATAACAGAGAAGGCTGA
cataggcaattaaacttttgagtttagctaacgacagctttattactgtctgcagCTATCTGGCTCCTGAATATGCACAGAGTGGGCAAATAACAGAGAAGGCTGATGTATACTCTTTCGGGGTTGTGTTAGTGGAACTTGTCACTGGGCGGAAG
agctaac putative branch site (score: 2)
aattaaacttttga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgggttttaatactattctatgaatattttcatcataggcaattaaacttttgagtttagctaacgacagctttattactgtctgcagCTATCTGGCTCCTGAATATGCACAGAGTGGGCAAATAACAGAGAAGGCTGATGTATACTCTTTCGGGGTTGTGTTAGTGGAACTTGTCACTGGGCGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA