1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tctgctgatctctgctagccattcaatattttttttgtggttcctgttgaagtattaatttcatattatggttgtaagttccataatgattgcccgacagGTTGGAGATTTCGGCCTGGCGCGATGGCAACCCGATGGAGACATGGGCGTTGAAACAAGAGTTATCGGCACATTCGG
species | Zea mays |
transcript | GRMZM2G480607_T02 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GTGACATGAGACCAAACAACATCCTTGTCACACATGATTTCGAACCACTG GTTGGAGATTTCGGCCTGGCGCGATGGCAACCCGATGGAGACATGGGCGTTEST: gi|32809375|gb|CD961609.1|CD961609
genomic: GTGACATGAGACCAAACAACATCCTTGTCACACATGATTTCGAACCACTGgtatagtcct ... tgcccgacagGTTGGAGATTTCGGCCTGGCGCGATGGCAACCCGATGGAGACATGGGCGTT
EST: GTGACATGAGACCAAACAACATCCTTGTCACACATGATTTCGAACCACTG GTTGGAGATTTCGGCCTGGCGCGATGGCAACCTGATGGAGACATGGGCGTTEST: gi|29129926|gb|CB380630.1|CB380630
genomic: GTGACATGAGACCAAACAACATCCTTGTCACACATGATTTCGAACCACTGgtatagtcct ... tgcccgacagGTTGGAGATTTCGGCCTGGCGCGATGGCAACCCGATGGAGACATGGGCGTT
EST: GTGACATGAGACCAAACAACATCCTTGTCACACATGATTTCGAACCACTG GTTGGAGATTTC-GCNCTGGCGCGATGGCAACCCGATGGAGACATGGGCGTEST: gi|32827128|gb|CD966806.1|CD966806
genomic: GTGACATGAGACCAAACAACATCCTTGTCACACATGATTTCGAACCACTGgtatagtcct ... tgcccgacagGTTGGAGATTTCGGC-CTGGCGCGATGGCAACCCGATGGAGACATGGGCGT
EST: GTGACATGAGACCAAACAACATCCTTGTCACACATGATTTCGAACCACTG GTTGGAGATTTCGGCCTGGCGCGATGGCAACCTGATGGAGACATGGGCGTT
genomic: GTGACATGAGACCAAACAACATCCTTGTCACACATGATTTCGAACCACTGgtatagtcct ... tgcccgacagGTTGGAGATTTCGGCCTGGCGCGATGGCAACCCGATGGAGACATGGGCGTT
gttgaagtattaatttcatattatggttgtaagttccataatgattgcccgacagGTTGGAGATTTCGGCCTGGCGCGATGGCAACCCGATGGAGACATGGGCGTTGAAACAAGAGTTATCGGCACATTCGG
tattaat putative branch site (score: 2)
tattaatttcatatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctgctgatctctgctagccattcaatattttttttgtggttcctgttgaagtattaatttcatattatggttgtaagttccataatgattgcccgacagGTTGGAGATTTCGGCCTGGCGCGATGGCAACCCGATGGAGACATGGGCGTTGAAACAAGAGTTATCGGCACATTCGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA