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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaatttctgcgccaaatagtttcacaagaaatgtaatatatttctttttttttaaaaaaaagatggtggtgataataaacattttgtctttccaatgcagAATTGCCAGAGAGATCTTATGGAGCTGATTGCCGTTTGTATGTTCCAGAAAACCCTAAAAACAAGTTCATAAATATTTATGTATGATTTTTCTGTATGAA

Basic information

species Zea mays
transcript GRMZM2G477340_T03
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G477340_T03 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os05g48060.1 (Oryza sativa), 3'ss of exon 6
gtaaaatttctgcgccaaatagtttcacaagaaatgtaatatatttctttttttttaaaaaaaagatggtggtgataataaacattttgtctttccaatgcagAATTGCCAGAGAGATCTTATGGAGCTGATTGCCGTTTGTATGTTCCAGAAAACCCTAAAAACAAGTTCATAAATATTTATGTATGATTTTTCTGTATGAA
|||| || | | |  | ||  | || |||    |  | | |||||          || || |||     ||||| | | ||||||||       | |||||||||||||| |||||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||                    
gtaatatctttacatcgaaaggatttacactggaaattaaatattg---------tagaagaaa-----tggtgctgacaaacatttctgtacactaatgcagAATTGCCGGAGAGATCTTATGGAGCTGACTGCCGTCTGTATGTTCCGGAAAACCCTAAAAACAAGTTCATAAATATTTAT--------------------


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttttttaaaaaaaagatggtggtgataataaacattttgtctttccaatgcagAATTGCCAGAGAGATCTTATGGAGCTGATTGCCGTTTGTATGTTCCAGAAAACCCTAAAAACAAGTTCATAAATATTTATGTATGATTTTTCTGTATGAA
                                  cattttgtctttcc  CT-rich tract
                        tgataataaacatttt  TA-rich tract