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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggcttcctgcccaagaacagaacgtctcacactggatgcagccgtgtggctgcaagtgcaagcgtcactcatttcccgctccaaatggctagATCGTCCGGTACCTGGAGGGCGAGCTGTCGGTGGAGGACCTGAACGCCGGCGTGGTGCCGGGGCAGAGCGCGGTGCAGCGGTCGGGCGGCGGCACCACGG

Basic information

species Zea mays
transcript GRMZM2G470499_T03
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G470499_T02 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os01g54700.1 (Oryza sativa), 3'ss of exon 7
-----------------gtaaggcttc-ctgcccaagaacaga---acgtctcacactggatgcagccgtgtggctgcaagtgca-agcgt---cact---catttcccgctccaaatggctagATCGTCCGGTACCTGGAGGGCGAGCTGTCGGTGGAGGACCTGAACGCCGGCGTGGTGCCGGGGCAGAGCGCGGTGCAGCGGTCGGGCGGCGGCACCACGG
                   |   |||| |||  |||  ||| |   ||  | ||||| | | |    |  ||  | |||| | |  ||| |   ||||    || |       | |||||  ||||||| || |||||||||||||||||| ||| ||||||||||||||| ||||||  ||| |||||||||||| |||||||| || |||||||||| ||||
gttcttgccaaaactcctcacaccttcactgaacaaacacaaacacacagcacacaccgcacggcttctggtttcagcaactccgtagcttgtacactgaaaatgtggacactcgaatggtcagATCGTGCGTTACCTGGAGGGCGAGCTGGCGGCGGAGGACCTGAACGCTGGCGTGACGCCCGGGCAGAGCGCGATGCAGCGGACGAGCGGCGGCACGACGG