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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgcagtctcgtctgcattacatatgtgcttagaatctgccaagttgtcgttaaaaagtctaccattgttgttgcagGTGTTGTAGAGTTGGTTGCAGACCATGTAGTTTGTGAGGAAGGAAAGCCCCTTTCGCCAGAAGCAGCGCAGACTCTG

Basic information

species Zea mays
transcript GRMZM2G467086_T01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G467086_T01 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os12g01430.1 (Oryza sativa), 3'ss of exon 6
gtttgcagtctcgtctgcattacatatgtgc---ttagaatctgccaagtt--gtcgttaaaaagtctaccattgttgttgcagGTGTTGTAGAGTTGGTTGCAGACCATGTAGTTTGTGAGGAAGGAAAGCCCCTTTCGCCAGAAGCAGCGCAGACTCTG
||| ||||| ||  || ||||   | || ||   || |||    |||||     | |||  ||||| |  | | |||| ||||||||  ||||| || |||||||| ||  |||| ||||| ||||| |||||| |||| ||||||||||| || ||||||
gttagcagtttc-cctacattttttgtgcgcgtgttggaaatcaccaagcgaaatggttgtaaagtttggcctggttgatgcagGTGCGGTAGAATTAGTTGCAGATCACATAGTATGTGAAGAAGGGAAGCCCATTTCACCAGAAGCAGCACAAACTCTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21891514|gb|BQ744727.1|BQ744727
EST:     GATGGAGCCATTTCTACGCAAGCAAGGACTTCCAGTTCGCTTGAACAAAG                         GTGTTGTAGAGTTGGTTGCAGACCATGTAGTTTGTGAGG
genomic: GATGGAGCCATTTCTACGCAAGCAAGGACTTCCAGTTCGCTTGAACAAAGgtttgcagtc ... gttgttgcagGTGTTGTAGAGTTGGTTGCAGACCATGTAGTTTGTGAGG
EST: gi|440735|gb|T14756.1|T14756
EST:     AGCCATTTCTACGCAAGCAAGGACTTCCAGTTCGCTTGAACAAAG                         GTGTTGTAGAGTTGGTTGCAGACCATGTAGTTTGTGAGGAAGGAAAGCCCC
genomic: AGCCATTTCTACGCAAGCAAGGACTTCCAGTTCGCTTGAACAAAGgtttgcagtc ... gttgttgcagGTGTTGTAGAGTTGGTTGCAGACCATGTAGTTTGTGAGGAAGGAAAGCCCC
EST: gi|26559664|gb|CA831899.1|CA831899
EST:     GATGGAGCCATTTCTACGCAAGCAAGGACTTCCAGTTCGCTTGAACAAAG                         GTGTTGTAGAGT
genomic: GATGGAGCCATTTCTACGCAAGCAAGGACTTCCAGTTCGCTTGAACAAAGgtttgcagtc ... gttgttgcagGTGTTGTAGAGT
EST: gi|149010282|gb|EE042111.2|EE042111
EST:     GATGGAGCCATTTCTACGCAAGCAAGGACTTCCAGTTCGCTTGAACAAAG                         GTGTTGTAGAGTTGGTTGCAGACCATGTAGTTTGTGAGGAAGGAAAGCCCC
genomic: GATGGAGCCATTTCTACGCAAGCAAGGACTTCCAGTTCGCTTGAACAAAGgtttgcagtc ... gttgttgcagGTGTTGTAGAGTTGGTTGCAGACCATGTAGTTTGTGAGGAAGGAAAGCCCC
EST: gi|60347115|gb|DN214088.1|DN214088
EST:     GATGGAGCCATTTCTACGCAAGCAAGGACTTCCAGTTCGCTTGAACAAAG                         GTGTTGTAGAGTTGGTTGCAGACCATGTAGTTTGTGAGGAAGGAAAGCCCC
genomic: GATGGAGCCATTTCTACGCAAGCAAGGACTTCCAGTTCGCTTGAACAAAGgtttgcagtc ... gttgttgcagGTGTTGTAGAGTTGGTTGCAGACCATGTAGTTTGTGAGGAAGGAAAGCCCC
EST: gi|67015514|gb|CO444263.1|CO444263
EST:     GATGGAGCCATTTCTACGCAAGCAAGGACTTCCAGTTCGCTTGAACAAAG                         GTGTTGTAGAGTTGGTTGCAGACCATGTAGTTTGTGAGGAAGGAAAGCCCC
genomic: GATGGAGCCATTTCTACGCAAGCAAGGACTTCCAGTTCGCTTGAACAAAGgtttgcagtc ... gttgttgcagGTGTTGTAGAGTTGGTTGCAGACCATGTAGTTTGTGAGGAAGGAAAGCCCC
EST: gi|20802773|gb|BQ293823.1|BQ293823
EST:     GATGGAGCCATTTCTACGCAAGCAAGGACTTCCAGTTCGCTTGAACAAAG                         GTGTTGTAGAGTTGGTTGCAGACCATGTAGTTTGTGAGGAAGGAAAGCCCC
genomic: GATGGAGCCATTTCTACGCAAGCAAGGACTTCCAGTTCGCTTGAACAAAGgtttgcagtc ... gttgttgcagGTGTTGTAGAGTTGGTTGCAGACCATGTAGTTTGTGAGGAAGGAAAGCCCC
EST: gi|71441332|gb|DR822382.1|DR822382
EST:     GATGGAGCCATTTCTACGCAAGCAAGGACTTCCAGTTCGCTTGAACAAAG                         GTGTTGTAGAGTTGGTTGCAGACCATGTAGTTTGTGAGGAAGGAAAGCCCC
genomic: GATGGAGCCATTTCTACGCAAGCAAGGACTTCCAGTTCGCTTGAACAAAGgtttgcagtc ... gttgttgcagGTGTTGTAGAGTTGGTTGCAGACCATGTAGTTTGTGAGGAAGGAAAGCCCC
EST: gi|37397689|gb|CF636152.1|CF636152
EST:     GATGGTGCCATTTCTACGCAAGCAAGGACTTCCAGTTCGCTTGAACAAAG                         GTGTTGTATAGTTGGTTGCAGACCATGTAGTTTGTGAGGAAGGAAAGCCCC
genomic: GATGGAGCCATTTCTACGCAAGCAAGGACTTCCAGTTCGCTTGAACAAAGgtttgcagtc ... gttgttgcagGTGTTGTAGAGTTGGTTGCAGACCATGTAGTTTGTGAGGAAGGAAAGCCCC
EST: gi|40337158|gb|CK371228.1|CK371228
EST:     GATGGTGCCATTTCTACGCAAGCAAGGACTTCCAGTTCGCTTGAACAAAG                         GTGTTGTATAGTTGGTTGCAGACCATGTAGTTTGTGAGGAAGGAAAGCCCC
genomic: GATGGAGCCATTTCTACGCAAGCAAGGACTTCCAGTTCGCTTGAACAAAGgtttgcagtc ... gttgttgcagGTGTTGTAGAGTTGGTTGCAGACCATGTAGTTTGTGAGGAAGGAAAGCCCC
EST: gi|5499042|gb|AI854909.1|AI854909
EST:     GATGGAGCCATTTCTACGCAAGCAAGGACTTCCAGTTCGCTTGAACAANG                         GTGTTGTAGAGTTGGTTGCAGACCATGTAGTTGGTGAGGAAGGAAAGCCCC
genomic: GATGGAGCCATTTCTACGCAAGCAAGGACTTCCAGTTCGCTTGAACAAAGgtttgcagtc ... gttgttgcagGTGTTGTAGAGTTGGTTGCAGACCATGTAGTTTGTGAGGAAGGAAAGCCCC
EST: gi|30088302|gb|CB886507.1|CB886507
EST:     GATGGAGCCATTTCTACGCAAGCAAGGACTTCCAGTTCGCTTGAACAAAG                         GTGTTGTAGAGTTGGTTGCAGACCATGTAGTTTGTGAGGAAGGAAAGCCCC
genomic: GATGGAGCCATTTCTACGCAAGCAAGGACTTCCAGTTCGCTTGAACAAAGgtttgcagtc ... gttgttgcagGTGTTGTAGAGTTGGTTGCAGACCATGTAGTTTGTGAGGAAGGAAAGCCCC
EST: gi|71434423|gb|DR815473.1|DR815473
EST:     GATGGAGCCATTTCTACGCAAGCAAGGACTTCCAGTTCGCTTGAACAAAG                         GTGTTGTAGAGTTGGTTGCAGACCATGTAGTTTGTGAGGAAGGAAAGCCCC
genomic: GATGGAGCCATTTCTACGCAAGCAAGGACTTCCAGTTCGCTTGAACAAAGgtttgcagtc ... gttgttgcagGTGTTGTAGAGTTGGTTGCAGACCATGTAGTTTGTGAGGAAGGAAAGCCCC
EST: gi|71441331|gb|DR822381.1|DR822381
EST:     GATGGAGCCATTTCTACGCAAGCAAGGACTTCCAGTTCGCTTGAACAAAG                         GTGTTGTAGAGTTGGTTGCAGACCATGTAGTTTGTGAGGAAGGAAAGCCCC
genomic: GATGGAGCCATTTCTACGCAAGCAAGGACTTCCAGTTCGCTTGAACAAAGgtttgcagtc ... gttgttgcagGTGTTGTAGAGTTGGTTGCAGACCATGTAGTTTGTGAGGAAGGAAAGCCCC
EST: gi|71447892|gb|DR828942.1|DR828942
EST:     GATGGAGCCATTTCTACGCAAGCAAGGACTTCCAGTTCGCTTGAACAAAG                         GTGTTGTAGAGTTGGTTGCAGACCATGTAGTTTGTGAGGAAGGAAAGCCCC
genomic: GATGGAGCCATTTCTACGCAAGCAAGGACTTCCAGTTCGCTTGAACAAAGgtttgcagtc ... gttgttgcagGTGTTGTAGAGTTGGTTGCAGACCATGTAGTTTGTGAGGAAGGAAAGCCCC
EST: gi|37387625|gb|CF631010.1|CF631010
EST:     CTTCCAGTTCGCTTGAACAAAG                         GTGTTGTAGAGTTGGTTGCAGACCATGTAGTTTGTGAGGAAGGAAAGCCCC
genomic: CTTCCAGTTCGCTTGAACAAAGgtttgcagtc ... gttgttgcagGTGTTGTAGAGTTGGTTGCAGACCATGTAGTTTGTGAGGAAGGAAAGCCCC
EST: gi|5439234|gb|AI820155.1|AI820155
EST:     GATGGAGCCATTTCTACGCAAGCAAGGACTTCCAGTTCGCTTGAACAAAG                         GTGTTGTAGAGTTGGTTGCAGACCATGTAGTTTGTGAGGAAGGAAAGCCCC
genomic: GATGGAGCCATTTCTACGCAAGCAAGGACTTCCAGTTCGCTTGAACAAAGgtttgcagtc ... gttgttgcagGTGTTGTAGAGTTGGTTGCAGACCATGTAGTTTGTGAGGAAGGAAAGCCCC
EST: gi|21828674|gb|BQ703358.1|BQ703358
EST:     GATGGAGCCATTTCTACGCAAGCAAGGACTTCCAGTTCGCTTGAACAAAG                         GTGTTGTAGAGTTGGTTGCAGACCATGTAGTTTGTGAGGAAGGAAAGCCCC
genomic: GATGGAGCCATTTCTACGCAAGCAAGGACTTCCAGTTCGCTTGAACAAAGgtttgcagtc ... gttgttgcagGTGTTGTAGAGTTGGTTGCAGACCATGTAGTTTGTGAGGAAGGAAAGCCCC
EST: gi|5895917|gb|AW037163.1|AW037163
EST:     GATGGAGCCATTTCTACGCAAGCAAGGACTTCCAGTTCGCTTGAACAAAG                         GTGTTGTAGAGTTGGTTGCAGACCATGTAGTTTGTGAGGAAGGAAAACCCC
genomic: GATGGAGCCATTTCTACGCAAGCAAGGACTTCCAGTTCGCTTGAACAAAGgtttgcagtc ... gttgttgcagGTGTTGTAGAGTTGGTTGCAGACCATGTAGTTTGTGAGGAAGGAAAGCCCC
EST: gi|71322698|gb|DR798027.1|DR798027
EST:     GATGGAGCCATTTCTACGCAAGCAAGGACTTCCAGTTCGCTTGAACAAAG                         GTGTTGTAGAGTTGGTTGCAGACCATGTAGTTTGTGAGGAAGGAAAGCCCC
genomic: GATGGAGCCATTTCTACGCAAGCAAGGACTTCCAGTTCGCTTGAACAAAGgtttgcagtc ... gttgttgcagGTGTTGTAGAGTTGGTTGCAGACCATGTAGTTTGTGAGGAAGGAAAGCCCC
EST: gi|78544743|gb|DV622241.1|DV622241
EST:     GATGGAGCCATTTCTACGCAAGCAAGGACTTCCAGTTCGCTTGAACAAAG                         GTGTTGTAGAGTTGGTTGCAGACCATGTAGTTTGTGAGGAAGGAAAGCCCC
genomic: GATGGAGCCATTTCTACGCAAGCAAGGACTTCCAGTTCGCTTGAACAAAGgtttgcagtc ... gttgttgcagGTGTTGTAGAGTTGGTTGCAGACCATGTAGTTTGTGAGGAAGGAAAGCCCC
EST: gi|211520202|gb|FL010171.1|FL010171
EST:     GATGGAGCCATTTCTACGCAAGCAAGGACTTCCAGTTCGCTTGAACAAAG                         GTGTTGTAGAGTTGGTTGCAGACCATGTAGTTTGTGAGGAAGGAAAGCCCC
genomic: GATGGAGCCATTTCTACGCAAGCAAGGACTTCCAGTTCGCTTGAACAAAGgtttgcagtc ... gttgttgcagGTGTTGTAGAGTTGGTTGCAGACCATGTAGTTTGTGAGGAAGGAAAGCCCC
EST: gi|22819557|gb|BU499647.1|BU499647
EST:     GATGGAGCCATTTCTACGCAAGCAAGGACTTCCAGTTCGCTTGAACAAAG                         GTGTTGTAGAGTTGGTTGCAGACCATGTAGTTTGTGAGGAAGG
genomic: GATGGAGCCATTTCTACGCAAGCAAGGACTTCCAGTTCGCTTGAACAAAGgtttgcagtc ... gttgttgcagGTGTTGTAGAGTTGGTTGCAGACCATGTAGTTTGTGAGGAAGG
EST: gi|67020213|gb|CO448962.1|CO448962
EST:     GATGGAGCCATTTCTACGCAAGCAAGGACTTCCAGTTCGCTTGAACAAAG                         GTGTTGTANAGTTGGTTGCAGACCATGTAGTTTGTGAGGAAGGAAAGCCCC
genomic: GATGGAGCCATTTCTACGCAAGCAAGGACTTCCAGTTCGCTTGAACAAAGgtttgcagtc ... gttgttgcagGTGTTGTAGAGTTGGTTGCAGACCATGTAGTTTGTGAGGAAGGAAAGCCCC
EST: gi|101383868|gb|EB813989.1|EB813989
EST:     GATGGAGCCATTTCTACGCAAGCAAGGACTTCCAGTTCGCTTGAACAAAG                         GTGTTGTAGAGTTGGTTGCAGACCATGTAGTTTGTGAGGAAGGAAAGCCCC
genomic: GATGGAGCCATTTCTACGCAAGCAAGGACTTCCAGTTCGCTTGAACAAAGgtttgcagtc ... gttgttgcagGTGTTGTAGAGTTGGTTGCAGACCATGTAGTTTGTGAGGAAGGAAAGCCCC
EST: gi|20301587|gb|BQ164530.1|BQ164530
EST:     GATGGAGCCATTTCTACGCAAGCAAGGACTTCCAGTTCGCTTGAACAAAG                         GTGTTGTAGAGTTGGTTGCAGACCATGTAGTTTGTGAGGAAGGAAAGCCCC
genomic: GATGGAGCCATTTCTACGCAAGCAAGGACTTCCAGTTCGCTTGAACAAAGgtttgcagtc ... gttgttgcagGTGTTGTAGAGTTGGTTGCAGACCATGTAGTTTGTGAGGAAGGAAAGCCCC
EST: gi|60399755|gb|DN232565.1|DN232565
EST:     GATGGAGCCATTTCTACGCAAGCAAGGACTTCCAGTTCGCTTGAACAAAG                         GTGTTGTAGAGTTGGTTGCAGACCATGTAGTTTGTGAGGAAGGAAAGCCCC
genomic: GATGGAGCCATTTCTACGCAAGCAAGGACTTCCAGTTCGCTTGAACAAAGgtttgcagtc ... gttgttgcagGTGTTGTAGAGTTGGTTGCAGACCATGTAGTTTGTGAGGAAGGAAAGCCCC
EST: gi|20301485|gb|BQ164428.1|BQ164428
EST:     GATGGAGCCATTTCTACGCAAGCAAGGACTTCCAGTTCGCTTGAACAAAG                         GTGTTGTAGAGTTGGTTGCAAGACCATGTAGTTTGTGAGGAAGGAAAGCCC
genomic: GATGGAGCCATTTCTACGCAAGCAAGGACTTCCAGTTCGCTTGAACAAAGgtttgcagtc ... gttgttgcagGTGTTGTAGAGTTGGTTGCA-GACCATGTAGTTTGTGAGGAAGGAAAGCCC
EST: gi|148969444|gb|EE020248.2|EE020248
EST:     GATGGAGCCATTTCTACGCAAGCAAGGACTTCCAGTTCGCTTGAACAAAG                         GTGTTGTAGAGTTGGTTGCAGACCATGTAGTTTGTGAGGAAGGAAAGCCCC
genomic: GATGGAGCCATTTCTACGCAAGCAAGGACTTCCAGTTCGCTTGAACAAAGgtttgcagtc ... gttgttgcagGTGTTGTAGAGTTGGTTGCAGACCATGTAGTTTGTGAGGAAGGAAAGCCCC
EST: gi|4225461|gb|AI395914.1|AI395914
EST:     GATGGAGCCATTTCTACGCAAGCAAGGACTTCCAGTTCGCTTGAACAAAG                         GTGTTGTAGAGTTGGTTGCAGACCATGTAGTTTGTGAGGAAGGAAAGCCCC
genomic: GATGGAGCCATTTCTACGCAAGCAAGGACTTCCAGTTCGCTTGAACAAAGgtttgcagtc ... gttgttgcagGTGTTGTAGAGTTGGTTGCAGACCATGTAGTTTGTGAGGAAGGAAAGCCCC
EST: gi|78026443|gb|DV494830.1|DV494830
EST:     GATGGAGCCATTTCTACGCAAGCAAGGACTTCCAGTTCGCTTGAACAAAG                         GTGTTGTAGAGTTGGTTGCAGACCATGTAGTTTGTGAGGAAGGAAAGCCCC
genomic: GATGGAGCCATTTCTACGCAAGCAAGGACTTCCAGTTCGCTTGAACAAAGgtttgcagtc ... gttgttgcagGTGTTGTAGAGTTGGTTGCAGACCATGTAGTTTGTGAGGAAGGAAAGCCCC
EST: gi|5398724|gb|AI812189.1|AI812189
EST:     GATGGAGCCATTTCTACGCAAGCAAGGACTTCCAGTTCGCTTGAACAAAG                         GTGTTGTAGAGTTGGTTGCAGACCATGTAGTTTGTGAGGAAGGAAAGCCCC
genomic: GATGGAGCCATTTCTACGCAAGCAAGGACTTCCAGTTCGCTTGAACAAAGgtttgcagtc ... gttgttgcagGTGTTGTAGAGTTGGTTGCAGACCATGTAGTTTGTGAGGAAGGAAAGCCCC
EST: gi|5108236|gb|AI739949.1|AI739949
EST:     GATGGAGCCATTTCTACGCAAGCAAGGACTTCCAGTTCGCTTGAACAAAG                         GTGTTGTAGAGTTGGTTGCAGACCATGTAGTTTGTGAGGAAGGAAAGCCCC
genomic: GATGGAGCCATTTCTACGCAAGCAAGGACTTCCAGTTCGCTTGAACAAAGgtttgcagtc ... gttgttgcagGTGTTGTAGAGTTGGTTGCAGACCATGTAGTTTGTGAGGAAGGAAAGCCCC
EST: gi|149015123|gb|EE044887.2|EE044887
EST:     GATGGAGCCATTTCTACGCAAGCAAGGACTTCCAGTTCGCTTGAACAAAG                         GTGTTGTAGAGTTGGTTGCAGACCATGTAGTTTGTGAGGAAGGAAAGCCCC
genomic: GATGGAGCCATTTCTACGCAAGCAAGGACTTCCAGTTCGCTTGAACAAAGgtttgcagtc ... gttgttgcagGTGTTGTAGAGTTGGTTGCAGACCATGTAGTTTGTGAGGAAGGAAAGCCCC
EST: gi|87156128|gb|DY400917.1|DY400917
EST:     GATGGAGCCATTTCTACGCAAGCAAGGACTTCCAGTTCGCTTGAACAAAG                         GTGTTGTAGAGTTGGTTGCAGACCATGTAGTTTGTGAGGAAGGAAAGCCCC
genomic: GATGGAGCCATTTCTACGCAAGCAAGGACTTCCAGTTCGCTTGAACAAAGgtttgcagtc ... gttgttgcagGTGTTGTAGAGTTGGTTGCAGACCATGTAGTTTGTGAGGAAGGAAAGCCCC
EST: gi|37381233|gb|CF627490.1|CF627490
EST:     GATGGAGCCATTTCTACGCAAGCAAGGACTTCCAGTTCGCTTGAACAAAG                         GTGTTGTAGAGTTGGTTGCAGACCATGTAGTTTGTGAGGAAGGAAAGCCCC
genomic: GATGGAGCCATTTCTACGCAAGCAAGGACTTCCAGTTCGCTTGAACAAAGgtttgcagtc ... gttgttgcagGTGTTGTAGAGTTGGTTGCAGACCATGTAGTTTGTGAGGAAGGAAAGCCCC
EST: gi|22549184|gb|BU101385.1|BU101385
EST:     GATGGAGCCATTTCTACGCAAGCAAGGACTTCCAGTTCGCTTGAACAAAG                         GTGTTGTAGAGTTGGTTGCAGACCATGTAGTTTGTGAGGAAGGAAAGCCCC
genomic: GATGGAGCCATTTCTACGCAAGCAAGGACTTCCAGTTCGCTTGAACAAAGgtttgcagtc ... gttgttgcagGTGTTGTAGAGTTGGTTGCAGACCATGTAGTTTGTGAGGAAGGAAAGCCCC
EST: gi|89761969|gb|DY689774.1|DY689774
EST:     GATGGAGCCATTTCTACGCAAGCAAGGACTTCCAGTTCGCTTGAACAAAG                         GTGTTGTAGAGTTGGTTGCAGACCATGTAGTTTGTGAGGAAGGAAAGCCCC
genomic: GATGGAGCCATTTCTACGCAAGCAAGGACTTCCAGTTCGCTTGAACAAAGgtttgcagtc ... gttgttgcagGTGTTGTAGAGTTGGTTGCAGACCATGTAGTTTGTGAGGAAGGAAAGCCCC
EST: gi|78119879|gb|DV538263.1|DV538263
EST:     GATGGAGCCATTTCTACGCAAGCAAGGACTTCCAGTTCGCTTGAACAAAG                         GTGTTGTAGAGTTGGTTGCAGACCATGTAGTTTGTGAGGAAGGAAAGCCCC
genomic: GATGGAGCCATTTCTACGCAAGCAAGGACTTCCAGTTCGCTTGAACAAAGgtttgcagtc ... gttgttgcagGTGTTGTAGAGTTGGTTGCAGACCATGTAGTTTGTGAGGAAGGAAAGCCCC
EST: gi|45568458|gb|CK986074.1|CK986074
EST:     GATGGAGCCATTTCTACGCAAGCAAGGACTTCCAGTTCGCTTGAACAAAG                         GTGTTGTAGAGTTGGTTGCAGACCATGTAGTTTGTGAGGAAGGAAAGCCCC
genomic: GATGGAGCCATTTCTACGCAAGCAAGGACTTCCAGTTCGCTTGAACAAAGgtttgcagtc ... gttgttgcagGTGTTGTAGAGTTGGTTGCAGACCATGTAGTTTGTGAGGAAGGAAAGCCCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatgtgcttagaatctgccaagttgtcgttaaaaagtctaccattgttgttgcagGTGTTGTAGAGTTGGTTGCAGACCATGTAGTTTGTGAGGAAGGAAAGCCCCTTTCGCCAGAAGCAGCGCAGACTCTG
                            ttaaaaagt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtttgcagtctcgtctgcattacatatgtgcttagaatctgccaagttgtcgttaaaaagtctaccattgttgttgcagGTGTTGTAGAGTTGGTTGCAGACCATGTAGTTTGTGAGGAAGGAAAGCCCCTTTCGCCAGAAGCAGCGCAGACTCTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGC