1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtgagtacaaaaaatttagcagttcttaattttccatgcttattgcttggctttaacattatgataattattaacgttgcgcatacggtgccagATTTGAGACATAGTAATGACCCGAGCCTTGTAAACAAGAGGGGTAACAATGGTGGGAGACTTGCAAGCCATTCAACGGTTGCAAGGCAAGATCCACCTCG
species | Zea mays |
transcript | GRMZM2G466549_T02 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTCTTTGACGAAATGGATGAAGATGGAA ATTTGAGACATAGTAATGACCCGAGCCTTGTAAACAAGAGGGGTAACAATGEST: gi|87157376|gb|DY402165.1|DY402165
genomic: TTCTTTGACGAAATGGATGAAGATGGAAgtgagtacaa ... acggtgccagATTTGAGACATAGTAATGACCCGAGCCTTGTAAACAAGAGGGGTAACAATG
EST: TTCTTTGACGAAATGGATGAAGATGGAA ATTTGAGACATAGTAATGACCCGAGCCTTGTAAACAAGAGGGGTAACAATGEST: gi|22935650|gb|BU571925.1|BU571925
genomic: TTCTTTGACGAAATGGATGAAGATGGAAgtgagtacaa ... acggtgccagATTTGAGACATAGTAATGACCCGAGCCTTGTAAACAAGAGGGGTAACAATG
EST: TTCTTTGACGAAATGGATGAAGATGGAA ATTTGAGACATAGTAATGACCCGAGCCTTGTAAACAAGAGGGGTAACAATGEST: gi|20507543|gb|BQ279677.1|BQ279677
genomic: TTCTTTGACGAAATGGATGAAGATGGAAgtgagtacaa ... acggtgccagATTTGAGACATAGTAATGACCCGAGCCTTGTAAACAAGAGGGGTAACAATG
EST: TTCTTTGACGAAATGGATGAAGATGGAA ATTTGAGACATAGTAATGACCCGAGCCTTGCTAAACAAGAGGGGTAACAATEST: gi|26559361|gb|CA831596.1|CA831596
genomic: TTCTTTGACGAAATGGATGAAGATGGAAgtgagtacaa ... acggtgccagATTTGAGACATAGTAATGACCCGAGCCTTG-TAAACAAGAGGGGTAACAAT
EST: TTCTTTGACGAAATGGATGAAGATGGAA ATTTGAGACATAGTAATGACCCGAGCCTTGTAAACAAGAGGGGTAACAATG
genomic: TTCTTTGACGAAATGGATGAAGATGGAAgtgagtacaa ... acggtgccagATTTGAGACATAGTAATGACCCGAGCCTTGTAAACAAGAGGGGTAACAATG
ttattgcttggctttaacattatgataattattaacgttgcgcatacggtgccagATTTGAGACATAGTAATGACCCGAGCCTTGTAAACAAGAGGGGTAACAATGGTGGGAGACTTGCAAGCCATTCAACGGTTGCAAGGCAAGATCCACCTCG
tattaac putative branch site (score: 22)
tttaacattatgataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtacaaaaaatttagcagttcttaattttccatgcttattgcttggctttaacattatgataattattaacgttgcgcatacggtgccagATTTGAGACATAGTAATGACCCGAGCCTTGTAAACAAGAGGGGTAACAATGGTGGGAGACTTGCAAGCCATTCAACGGTTGCAAGGCAAGATCCACCTCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA