1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtatttcctcaagtcttgcaatcagttttatttatcatatgagtagcagaatagggaagggtttgtagcttctgaaaaacatttacatggatctcaagttaaaatatcataggtaactgttatccctaccttgcagCTTTACTGAACTCCATTGGAAGAATCATATGTAGAACAGTTGAGCAG
species | Zea mays |
transcript | GRMZM2G464885_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TCCTGGTGTCATCATGACTAACCTTTTTAGGAACAGGACTATTGTCTCTG CTTTACTGAACTCCATTGGAAGAATCATATGTAGAACAGTTGAGCAGEST: gi|71433931|gb|DR814981.1|DR814981
genomic: TCCTGGTGTCATCATGACTAACCTTTTTAGGAACAGGACTATTGTCTCTGgtatttcctc ... taccttgcagCTTTACTGAACTCCATTGGAAGAATCATATGTAGAACAGTTGAGCAG
EST: TCCTGGTGTCATCATGACTAACCTTTTTAGGAACAGGACTATTGTCTTTG CTTTACTGAACTCCATTGGAAGAATCATATGTAGAACAGTTGAGCAGEST: gi|60341574|gb|DN208547.1|DN208547
genomic: TCCTGGTGTCATCATGACTAACCTTTTTAGGAACAGGACTATTGTCTCTGgtatttcctc ... taccttgcagCTTTACTGAACTCCATTGGAAGAATCATATGTAGAACAGTTGAGCAG
EST: TCCTGGTGTCATCATGACTAACCTTTTTAGGAACAGGACTATTGTCTCTG CTTTACTGAACTCCATTGGAAGAATCATATGTAGAACAGTTGAGCAGEST: gi|71433932|gb|DR814982.1|DR814982
genomic: TCCTGGTGTCATCATGACTAACCTTTTTAGGAACAGGACTATTGTCTCTGgtatttcctc ... taccttgcagCTTTACTGAACTCCATTGGAAGAATCATATGTAGAACAGTTGAGCAG
EST: TCCTGGTGTCATCATGACTAACCTTTTTAGGAACAGGACTATTGTCTCTG CTTTACTGAACTCCATTGGAAGAATCATATGTAGAACAGTTGAGCAG
genomic: TCCTGGTGTCATCATGACTAACCTTTTTAGGAACAGGACTATTGTCTCTGgtatttcctc ... taccttgcagCTTTACTGAACTCCATTGGAAGAATCATATGTAGAACAGTTGAGCAG
tttacatggatctcaagttaaaatatcataggtaactgttatccctaccttgcagCTTTACTGAACTCCATTGGAAGAATCATATGTAGAACAGTTGAGCAG
aggtaac putative branch site (score: 9)
tccctacctt putative PPT
aagttaaaatatcata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatttcctcaagtcttgcaatcagttttatttatcatatgagtagcagaatagggaagggtttgtagcttctgaaaaacatttacatggatctcaagttaaaatatcataggtaactgttatccctaccttgcagCTTTACTGAACTCCATTGGAAGAATCATATGTAGAACAGTTGAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG