1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gcaagggtgtgacagtgtagagcattactgtgtctcctttttttgattcatggttaccttttgaaaccttatactgattattgttgcacaggatgtttgcttagcttcttttacattatttgcagAAAGGCGGTGGCACCATTGATCTTGAACCACGCCTTAGTCACACATCAGCTGTGGAGCCTACACTTGCTCCAGTTGCGGTTGAGCGCACAATGACGACAA
species | Zea mays |
transcript | GRMZM2G464000_T02 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GTGCTGGGATTGGTTGTAGCTTCCGCATAGAACGCTGCTGCATAGTTAAG AAAGGTGGTGGCACCATTGATCTTGAACCACGCCTTAGTCACACATCAGCTEST: gi|211146180|gb|FK958444.1|FK958444
genomic: GTGCTGGGATTGGTTGTAGCTTCCGCATAGAACGCTGCTGCATAGTTAAGgcaagggtgt ... ttatttgcagAAAGGCGGTGGCACCATTGATCTTGAACCACGCCTTAGTCACACATCAGCT
EST: GTGTTGGGATTGGTTGTAGCTTCCGCATAGAACGCTGCTGCATAGTTAAG AWAGGTGGTGGCACCATTGATCTTGAACCACGCCTTAGTCACACATCAGCTEST: gi|78077940|gb|DV506360.1|DV506360
genomic: GTGCTGGGATTGGTTGTAGCTTCCGCATAGAACGCTGCTGCATAGTTAAGgcaagggtgt ... ttatttgcagAAAGGCGGTGGCACCATTGATCTTGAACCACGCCTTAGTCACACATCAGCT
EST: GTGCTGGGATTGGTTGTAGCTTCCGCATAGAACGCTGCTGCATAGTTAAG AAAGGCGGTGGCACCATTGATCTTGAACCACGCCTTAGTCACACATCAGCT
genomic: GTGCTGGGATTGGTTGTAGCTTCCGCATAGAACGCTGCTGCATAGTTAAGgcaagggtgt ... ttatttgcagAAAGGCGGTGGCACCATTGATCTTGAACCACGCCTTAGTCACACATCAGCT
atactgattattgttgcacaggatgtttgcttagcttcttttacattatttgcagAAAGGCGGTGGCACCATTGATCTTGAACCACGCCTTAGTCACACATCAGCTGTGGAGCCTACACTTGCTCCAGTTGCGGTTGAGCGCACAATGACGACAA
tactgat putative branch site (score: 2)
ttcttttacattattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcaagggtgtgacagtgtagagcattactgtgtctcctttttttgattcatggttaccttttgaaaccttatactgattattgttgcacaggatgtttgcttagcttcttttacattatttgcagAAAGGCGGTGGCACCATTGATCTTGAACCACGCCTTAGTCACACATCAGCTGTGGAGCCTACACTTGCTCCAGTTGCGGTTGAGCGCACAATGACGACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG