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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagacataccgtccaaaaccgtgtttggctctctttgttcttgtggcagtatcttcatggtctttgacattactgttttttcttcttcttcagGCTCGTCTAATAGAAGGCATAATTGATCAGGTTGATGGAGTTGTCCATGTTTCACGGGTTAAACCAAGGGTGTTGGGCATAGACCAAGTGAAATGCTTGC

Basic information

species Zea mays
transcript GRMZM2G463267_T03
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|50335484|gb|CO530610.1|CO530610
EST:     CCAAGCTCCCTGTTGAAGATGTGGAGTATCTATTAATGAAGAGCCTCTCT                         GCTCGTTTAATAGAAGGCATAATTGATCAGGTTGATGGAGTTGTCCATGTT
genomic: CCAAGCTCCCTGTTGAAGATGTGGAGTATCTATTAATGAAGAGCCTCTCTgtaagacata ... tcttcttcagGCTCGTCTAATAGAAGGCATAATTGATCAGGTTGATGGAGTTGTCCATGTT
EST: gi|71761711|gb|DR959648.1|DR959648
EST:     CCAAGCTCCCTGTTGAAGATGTGGAGTATCTATTAATGAAGAGCCTCTCT                         GCTCGTCTAATAGAAGGCATAATTGATCAGGTTGATGGAGTTGTCCATGTT
genomic: CCAAGCTCCCTGTTGAAGATGTGGAGTATCTATTAATGAAGAGCCTCTCTgtaagacata ... tcttcttcagGCTCGTCTAATAGAAGGCATAATTGATCAGGTTGATGGAGTTGTCCATGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttgtggcagtatcttcatggtctttgacattactgttttttcttcttcttcagGCTCGTCTAATAGAAGGCATAATTGATCAGGTTGATGGAGTTGTCCATGTTTCACGGGTTAAACCAAGGGTGTTGGGCATAGACCAAGTGAAATGCTTGC
                       ctttgac  putative branch site (score: 4)
                             cattactgttttttct  CT-rich tract
                                     ttttttctt  TA-rich tract