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gtacaaagtagtcctatctgttttgttaattaagcagaacagaagtaggctgcgtttggacttattactacgaaactatgaactgcagGACTGGGCTGGTCAAAGCTTAAGTAGTATTGCTTCTGAATTATGCGGCCTGATAACCATCCTTTCTGGGACAATTTTGTTGCACACAGCAGAGGAGGGAG
species | Zea mays |
transcript | GRMZM2G461791_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ATGTAATGTTTACTACCCTTACAATAGTGGCAAGTGGAATTATGTTTAAG GACTGGGCTGGTCAAAGCTTAAGTAGTATTGCTTCTGAATTATGCGGCCTGEST: gi|60672698|gb|DN475392.1|DN475392
genomic: ATGTAATGTTTACTACCCTTACAATAGTGGCAAGTGGAATTATGTTTAAGgtacaaagta ... tgaactgcagGACTGGGCTGGTCAAAGCTTAAGTAGTATTGCTTCTGAATTATGCGGCCTG
EST: ATGTAATGTTTACTACCCTTACAATAGTGGCAAGTGGAATTATGTTTAAG GACTGGGCTGGTCAAAGCTTAAGTAGTATTGCTTCTGAATTATGCGGCCTGEST: gi|87154688|gb|DY399477.1|DY399477
genomic: ATGTAATGTTTACTACCCTTACAATAGTGGCAAGTGGAATTATGTTTAAGgtacaaagta ... tgaactgcagGACTGGGCTGGTCAAAGCTTAAGTAGTATTGCTTCTGAATTATGCGGCCTG
EST: ATGTAATGTTTACTACCCTTACAATAGTGGCAAGTGGAATTATGTTTAAG GACTGGGCTGGTNCAA-GCTTAAGTAGTATTGEST: gi|166508362|gb|EG135072.1|EG135072
genomic: ATGTAATGTTTACTACCCTTACAATAGTGGCAAGTGGAATTATGTTTAAGgtacaaagta ... tgaactgcagGACTGGGCTGGT-CAAAGCTTAAGTAGTATTG
EST: GTTTACTACCCTTACAATAGTGGCAAGTGGAATTATGTTTAAG GACTGGGCTTGGTCAAAGCTTAAGTAGTATTGCTTCTGAATTATGCGGCCT
genomic: GTTTACTACCCTTACAATAGTGGCAAGTGGAATTATGTTTAAGgtacaaagta ... tgaactgcagGACTGGGC-TGGTCAAAGCTTAAGTAGTATTGCTTCTGAATTATGCGGCCT
gcagaacagaagtaggctgcgtttggacttattactacgaaactatgaactgcagGACTGGGCTGGTCAAAGCTTAAGTAGTATTGCTTCTGAATTATGCGGCCTGATAACCATCCTTTCTGGGACAATTTTGTTGCACACAGCAGAGGAGGGAG
ttattacta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacaaagtagtcctatctgttttgttaattaagcagaacagaagtaggctgcgtttggacttattactacgaaactatgaactgcagGACTGGGCTGGTCAAAGCTTAAGTAGTATTGCTTCTGAATTATGCGGCCTGATAACCATCCTTTCTGGGACAATTTTGTTGCACACAGCAGAGGAGGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG