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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agactacattgcattagtgatagtggctcttatcgcgattatgtttggggggatccgtttctttgtcatcactattgaagtccttaactttcaagtgtacATGTGCATGGGCTTTTCAATGCTCTATTTGCGCCCCTTTATTCAGGATCAGTG

Basic information

species Zea mays
transcript GRMZM2G460078_T03
intron # 6
splice site 3'
intron type U12 (go to U12 genes for details)

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G460078_T02 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os01g55590.1 (Oryza sativa), 3'ss of exon 6
------------------------------------------------agactacattgcattag-tgatagtggctcttatcgcgattatgtttggggggatc---cgtttctttgtcatcactattgaagtccttaactttcaagtgtacATGTGCATGGGCTTTTCAATGCTCTATTTGCGCCCCTTTATTCAGGATCAGTG
                                                |   |  || | | | | |   | | | | |       ||| | ||||| || | |   | ||  ||||  |    |||| | ||||||||||| ||| | ||||||| ||||| || ||||||||||||||||| ||||| ||||| |||||||||
atatccacaaaaagctaatgctaaatgctattttaagtacttagcacaatgttttatagtaatggattgcattagatttccctataattgtttttggaggaaccatgccttcttttgcgagatttattaaggtccttaactt-caaatttacATGTTCATGGCCTGTTCAATGCTCTATTTGCACCCCTCTATTCTGGATCAGTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78111750|gb|DV530147.1|DV530147
EST:     GTGGGGATATCGAAGTGAAGACCAATTTCTGCACTGTCTCCCGCTGCACC                         ATGTGCATGGGCTTTTCAATGCTCTATTTGCGCCCCTT
genomic: GTGGGGATATCGAAGTGAAGACCAATTTCTGCACTGTCTCCCGCTGCACCatatccacat ... tcaagtgtacATGTGCATGGGCTTTTCAATGCTCTATTTGCGCCCCTT
EST: gi|32867327|gb|CF007009.1|CF007009
EST:     GTGGGGATATCGAAGTGAAGACCAATTTCTGCACTGACTCCCGCTGCACC                         ATGTGCATGGGCTTTTCAATGCTCTATTTGCGCCCCTTTATTCAGGATCAG
genomic: GTGGGGATATCGAAGTGAAGACCAATTTCTGCACTGTCTCCCGCTGCACCatatccacat ... tcaagtgtacATGTGCATGGGCTTTTCAATGCTCTATTTGCGCCCCTTTATTCAGGATCAG
EST: gi|14529467|gb|BI096600.1|BI096600
EST:     GTGGGGATATCGAAGTGAAGACCAATTTCTGCACTGTCTCCCGCTGCACC                         ATGTGCATGGGCTTTTCAATGCTCTATTTGCGCCCCTTTATTCAGGATCAG
genomic: GTGGGGATATCGAAGTGAAGACCAATTTCTGCACTGTCTCCCGCTGCACCatatccacat ... tcaagtgtacATGTGCATGGGCTTTTCAATGCTCTATTTGCGCCCCTTTATTCAGGATCAG
EST: gi|93012882|gb|EB638402.1|EB638402
EST:     GTGGGGATATCGAAGTGAAGACCAATTTCTGCACTGTCTCCCGCTGCACC                         ATGTGCATGGGCTTTTCAATGCTCTATTTGCGCCCCTTTATTCAGGATCAG
genomic: GTGGGGATATCGAAGTGAAGACCAATTTCTGCACTGTCTCCCGCTGCACCatatccacat ... tcaagtgtacATGTGCATGGGCTTTTCAATGCTCTATTTGCGCCCCTTTATTCAGGATCAG
EST: gi|76925597|gb|DV170498.1|DV170498
EST:     GTGGGGATATCGAAGTGAAGACCAATTTCTGCACTGTCTCCCGCTGCACC                         ATGTGCATGGGCTTTTNCA-TGCTCTATTTGCGCCCCTTTATT
genomic: GTGGGGATATCGAAGTGAAGACCAATTTCTGCACTGTCTCCCGCTGCACCatatccacat ... tcaagtgtacATGTGCATGGGCTTTT-CAATGCTCTATTTGCGCCCCTTTATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggggggatccgtttctttgtcatcactattgaagtccttaactttcaagtgtacATGTGCATGGGCTTTTCAATGCTCTATTTGCGCCCCTTTATTCAGGATCAGTG
                                  gtccttaac  putative branch site 
                                          ctttc  CT-rich tract
                                      ttaacttt  TA-rich tract