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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatataatccaggaatttcttatagagatttgtagggtgtttcatttttttgtaagtattgtcagttgttaaagtaaattaaaatgcttttcttaactcaattgatttgttcccatttatcatttcattgtatttttgcagGCTATATCTATCATGGCGAAACCTGGATTCGCTGAGTTGATAGATTTTAATCCAATCCATGCAACTGACGTCCAACTACCTTCAGGTGGTACATTTGTGA

Basic information

species Zea mays
transcript GRMZM2G458549_T02
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G458549_T02 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os03g61710.1 (Oryza sativa), 3'ss of exon 6
gtaatataatccaggaatttcttatagagatttgtagggtgtttcatttttttgtaagtattgtcagttgttaaagtaaattaaaatgcttttcttaactcaattgatttgttcccatttatcatttcattgtatttttgcagGCTATATCTATCATGGCGAAACCTGGATTCGCTGAGTTGATAGATTTTAATCCAATCCATGCAACTGACGTCCAACTACCTTCAGGTGGTACATTTGTGA
                                          | ||     |  ||  |||    | |   |||  ||  |||    || ||| |    | || |    ||||  |  ||| ||||||||| ||||||  |||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||| ||||| || ||||||||| |||| |||||||||||||
-----------------------------------------gtacaagcaatgctatttata--taatgaataacatattttagttggcctttttattttgaactaccctgttgtctgttaacatttcattatattttcccagGCTATATCTATCATGGCCAAACCTGGATTTGCTGAGTTGATAGATTTCAATCCAATCCATGCCACTGATGTGCAACTACCTCCAGGCGGTACATTTGTGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32806294|gb|CD958528.1|CD958528
EST:     CTTGTCTGTCTGAGCGCCACATTGGAACGCAATCTGGCGGCATGGATCAG                         GCTATATCTATCATGGCGAAACCTGGATTCGCTGAGTTGATAGATTTTA
genomic: CTTGTCTGTCTGAGCGCCACATTGGAACGCAATCTGGCGGCATGGATCAGgtaatataat ... atttttgcagGCTATATCTATCATGGCGAAACCTGGATTCGCTGAGTTGATAGATTTTA
EST: gi|17921536|gb|BM259187.1|BM259187
EST:     TGGAACGCAATCTGGCGGCATGGATCAG                         GCTATATCTATCATGGCGAAACCTGGATTCGCTGAGTTGATAGATTTTAAT
genomic: TGGAACGCAATCTGGCGGCATGGATCAGgtaatataat ... atttttgcagGCTATATCTATCATGGCGAAACCTGGATTCGCTGAGTTGATAGATTTTAAT
EST: gi|17921866|gb|BM259517.1|BM259517
EST:     TTGGAACGCAATCTGGCGGCATGGATCAG                         GCTATATCTATCATGGCGAAACCTGTATTCGCTGAGTTGATAGATTTTAAT
genomic: TTGGAACGCAATCTGGCGGCATGGATCAGgtaatataat ... atttttgcagGCTATATCTATCATGGCGAAACCTGGATTCGCTGAGTTGATAGATTTTAAT
EST: gi|74244484|gb|DT652398.1|DT652398
EST:     CTTGTCTGTCTGAGCGCCACATTGGAACGCAATCTGGCGGCATGGATCAG                         GCTATATCTATCATGGCGAAACCTGGATTCGCTGAGTTGATAGATTTTAAT
genomic: CTTGTCTGTCTGAGCGCCACATTGGAACGCAATCTGGCGGCATGGATCAGgtaatataat ... atttttgcagGCTATATCTATCATGGCGAAACCTGGATTCGCTGAGTTGATAGATTTTAAT
EST: gi|211139371|gb|FL028742.1|FL028742
EST:     CTGTCTGAGCGCCACATTGGAACGCAATCTGGCGGCATGGATCAG                         GCTATATCTATCATGGCGAAACCTGGATTCGCTGAGTTGATAGATTTTAAT
genomic: CTGTCTGAGCGCCACATTGGAACGCAATCTGGCGGCATGGATCAGgtaatataat ... atttttgcagGCTATATCTATCATGGCGAAACCTGGATTCGCTGAGTTGATAGATTTTAAT
EST: gi|108824283|gb|EC278291.1|EC278291
EST:     CTTGTCTGTCTGAGCGCCACATTGGAACGCAATCTGGCGGCATGGATCAG                         GCTATATCTATCATGGCGAAACCTGGATTCGCTGAGTTGATAGATTTTAAT
genomic: CTTGTCTGTCTGAGCGCCACATTGGAACGCAATCTGGCGGCATGGATCAGgtaatataat ... atttttgcagGCTATATCTATCATGGCGAAACCTGGATTCGCTGAGTTGATAGATTTTAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttttcttaactcaattgatttgttcccatttatcatttcattgtatttttgcagGCTATATCTATCATGGCGAAACCTGGATTCGCTGAGTTGATAGATTTTAATCCAATCCATGCAACTGACGTCCAACTACCTTCAGGTGGTACATTTGTGA
                                            tattttt  CT-rich tract
                            atttatcatttcattg  TA-rich tract