1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtcgtatgctaaactattagctatatattcatttatctattatctttaccagattagagcaattaatatatcaccaccttctctattcatccattttttttgggtatattcagTTGTGTACCAAATGCAGTTTTGATATTTGATGGTAGGACAGCATATGTTCGTGCATTGCAACCGATAAATAAAGATGAAGAG
species | Zea mays |
transcript | GRMZM2G457881_T03 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AGGCCTCTTGGGACTGGACTGTACCCTGTCATATCCATTATTAACCACAG TTGTGTACCAAATGCAGTTTTGATATTTGATGGTAGGACAGCATATGTTCGEST: gi|71322965|gb|DR798157.1|DR798157
genomic: AGGCCTCTTGGGACTGGACTGTACCCTGTCATATCCATTATTAACCACAGgtcgtatgct ... gtatattcagTTGTGTACCAAATGCAGTTTTGATATTTGATGGTAGGACAGCATATGTTCG
EST: AGGCCTCTTGGGACTGGACTGTACCCTGTCATATCCATTATTAACCACAG TTGTGTACCAAATGCAGTTTTGATATTTGATGGTAGGACAGCATATGTTCG
genomic: AGGCCTCTTGGGACTGGACTGTACCCTGTCATATCCATTATTAACCACAGgtcgtatgct ... gtatattcagTTGTGTACCAAATGCAGTTTTGATATTTGATGGTAGGACAGCATATGTTCG
gcaattaatatatcaccaccttctctattcatccattttttttgggtatattcagTTGTGTACCAAATGCAGTTTTGATATTTGATGGTAGGACAGCATATGTTCGTGCATTGCAACCGATAAATAAAGATGAAGAG
aattaat putative branch site (score: 3)
atttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcgtatgctaaactattagctatatattcatttatctattatctttaccagattagagcaattaatatatcaccaccttctctattcatccattttttttgggtatattcagTTGTGTACCAAATGCAGTTTTGATATTTGATGGTAGGACAGCATATGTTCGTGCATTGCAACCGATAAATAAAGATGAAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA