1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtagccgtccgggaaatctccaaactgtgggagtttttttttgtatgtacgtttgatgcggatttgaaatgttcttatgtttggatcgatcgtgtttgttcagGTTACTCGGCACTCCGAGAGCTGGGACGTCTCTGCGCTTCAGGCCATCGCTCAGATCTTCGTCTCGGCCCCGGAGGAGAAGCTGGAAGGCAGCTGAGGCT
species | Zea mays |
transcript | GRMZM2G454928_T05 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TGGTCGCGATCGGAGGGAGCACGACGTATGATCTGGATGGAGATTTCAAG GTTATTCGGCACTCCGAGAGCTGGGACGTCTCTGCGCTTCAGGCCATCGCTEST: gi|211394126|gb|FL452931.1|FL452931
genomic: TGGTCGCGATCGGAGGGAGCACGACGTATGATCTGGATGGAGATTTCAAGgtagccgtcc ... gtttgttcagGTTACTCGGCACTCCGAGAGCTGGGACGTCTCTGCGCTTCAGGCCATCGCT
EST: TGGTCGCGATCGGAGGGAGCACGACGTATGATCTGGATGGAGATTTCAAG GTTACTCGGCACTCCGAGAGCTGGGACGTCTCTGCGCTTCAGGCCATCGCTEST: gi|78022296|gb|DV490683.1|DV490683
genomic: TGGTCGCGATCGGAGGGAGCACGACGTATGATCTGGATGGAGATTTCAAGgtagccgtcc ... gtttgttcagGTTACTCGGCACTCCGAGAGCTGGGACGTCTCTGCGCTTCAGGCCATCGCT
EST: TGGTCGCGATCGGAGGGAGCACGACGTATGATCTGGATGGAGATTTCAAG GTTACTCGGCACTCCGAGAGCTGGGACGTCTCTGCGCTTCAGGCCATCGCTEST: gi|78122856|gb|DV541240.1|DV541240
genomic: TGGTCGCGATCGGAGGGAGCACGACGTATGATCTGGATGGAGATTTCAAGgtagccgtcc ... gtttgttcagGTTACTCGGCACTCCGAGAGCTGGGACGTCTCTGCGCTTCAGGCCATCGCT
EST: TGGTCGCGATCGGAGGGAGCACGACGTATGATCTGGATGGAGATTTCAAG GTTACTCGGCACTCCGAGAGCTGGGACGTCTCTGCGCTTCAGGCCATCGCTEST: gi|110521286|gb|EE025470.1|EE025470
genomic: TGGTCGCGATCGGAGGGAGCACGACGTATGATCTGGATGGAGATTTCAAGgtagccgtcc ... gtttgttcagGTTACTCGGCACTCCGAGAGCTGGGACGTCTCTGCGCTTCAGGCCATCGCT
EST: TGGTCGCGATCGGAGGGAGCACGACGTATGATCTGGATGGAGATTTCAAG GTTACTCGGCACTCCGAGAGCTGGGACGTTTTTGCGCTTCAGGCCATCGCTEST: gi|71320936|gb|DR797185.1|DR797185
genomic: TGGTCGCGATCGGAGGGAGCACGACGTATGATCTGGATGGAGATTTCAAGgtagccgtcc ... gtttgttcagGTTACTCGGCACTCCGAGAGCTGGGACGTCTCTGCGCTTCAGGCCATCGCT
EST: TGGTCGCGATCGGAGGGAGCACGACGTATGATCTGGATGGAGATTTCAAG GTTACTCGGCACTCCGAGAGCTGGGACGTCTCTGCGCTTCAGGCCATCGCTEST: gi|78109734|gb|DV528150.1|DV528150
genomic: TGGTCGCGATCGGAGGGAGCACGACGTATGATCTGGATGGAGATTTCAAGgtagccgtcc ... gtttgttcagGTTACTCGGCACTCCGAGAGCTGGGACGTCTCTGCGCTTCAGGCCATCGCT
EST: TGGTCGCGATCGGAGGGAGCACGACGTATGATCTGGATGGAGATTTCAAG GTTACTCGGCACTCCGAGAGCTGGGACGTCTCTGCGCTTCAGGCCATCGCT
genomic: TGGTCGCGATCGGAGGGAGCACGACGTATGATCTGGATGGAGATTTCAAGgtagccgtcc ... gtttgttcagGTTACTCGGCACTCCGAGAGCTGGGACGTCTCTGCGCTTCAGGCCATCGCT
acgtttgatgcggatttgaaatgttcttatgtttggatcgatcgtgtttgttcagGTTACTCGGCACTCCGAGAGCTGGGACGTCTCTGCGCTTCAGGCCATCGCTCAGATCTTCGTCTCGGCCCCGGAGGAGAAGCTGGAAGGCAGCTGAGGCT
gtttgat putative branch site (score: 5)
tttgttc putative PPT
atttgaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagccgtccgggaaatctccaaactgtgggagtttttttttgtatgtacgtttgatgcggatttgaaatgttcttatgtttggatcgatcgtgtttgttcagGTTACTCGGCACTCCGAGAGCTGGGACGTCTCTGCGCTTCAGGCCATCGCTCAGATCTTCGTCTCGGCCCCGGAGGAGAAGCTGGAAGGCAGCTGAGGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA