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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacataaactataatggccttctgttgttctcttttaggtcatcccacaactatcaacttttctgataagggcgtttgaattttattttcagACTGAGAATAGTTCCTACTTCATAGCGGCCAGGCACAAACTTGGTGCCTTTTTTTCTCTTGTTTTCCGTTTCTCTTCTTGTCACCATCCTTTGCTAGCTT

Basic information

species Zea mays
transcript GRMZM2G451672_T03
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G451672_T02 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os07g33670.1 (Oryza sativa), 3'ss of exon 4
gtacataaactataatggccttctgttgttctctt--ttaggtcatcccacaactatcaacttttctgataagggcgt--ttgaattttattttcagACTGAGAATAGTTCCTACTTCATAGCGGCCAGGCACAAACTTGGTGCCTTTTTTTCTCTTGTTTTCCGTTTCTCTTCTTGTCACCATCCTTTGCTAGCTT
||   ||||||||  ||      |||| |||| ||   |||||  |  ||| |||| |||   || ||||||| | ||  ||   ||||| || |||||||| |||| |||||||||| | |||||||||||||||||| ||||||| ||||| |||||||| || |||||||| |||||||| ||||||||||| |
gttggtaaactatcctg---cattgttattctgttagctaggttgtttcactactagcaatccttttgataagtgtgtattttggttttaattccagACTGAAAATAATTCCTACTTCGTTGCGGCCAGGCACAAACTTAGTGCCTTCTTTTCACTTGTTTTTCGGTTCTCTTCCTGTCACCACCCTTTGCTAGCCT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggtcatcccacaactatcaacttttctgataagggcgtttgaattttattttcagACTGAGAATAGTTCCTACTTCATAGCGGCCAGGCACAAACTTGGTGCCTTTTTTTCTCTTGTTTTCCGTTTCTCTTCTTGTCACCATCCTTTGCTAGCTT
                       ttctgat  putative branch site (score: 3)
                                           ttttattttc  putative PPT
                                     tttgaattttattttc  TA-rich tract