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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttacagaggcaaagatcgaaggactagcaatttaacttattaatttgtatatgatttattgaatcatattatttcaacagttatatttggtattgaatagGGTTGGTTTGCTGCCTCTTCTGGAATGTCATAGCAGTTACTACAGCTTGGATCAAGGGGGAAG

Basic information

species Zea mays
transcript GRMZM2G448715_T02
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G448715_T02 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os07g37740.1 (Oryza sativa), 3'ss of exon 6
----ttacagaggcaaagatcgaaggactagcaatttaacttattaatttgtatatgatttattgaatcatattatttcaacagttatatttggtattgaatagGGTTGGTTTGCTGCCTCTTCTGGAATGTCATAGCAGTTACTACAGCTTGGATCAAGGGGGAAG
    ||    ||  | | ||  ||||    |   | | | |||||  |    ||   |||   | |     |  |||   |||  | | |||||| | || |||| |||| |||||| ||||||||||| ||||||||||||||| |||||||| ||||||||||||
ttatttttctagttagaaataaaaggct--gtcttatgaattatt--tcaacattccattctgttatatgcaaaattaagacaactttttttggtgtcgagtagGATTGGCTTGCTGTCTCTTCTGGAACGTCATAGCAGTTACTTCAGCTTGGGTCAAGGGGGAAG

upper sequence: GRMZM2G448715_T02 (Zea mays), 3'ss of exon 6
lower sequence: AT1G61250.1 (Arabidopsis thaliana), 3'ss of exon 5
--------------------------------------------------------ttacagaggca---aagatcgaaggactagcaatttaacttatta-atttgtatatgat--ttattgaatcatattatttcaac--agttatatttggtattgaatagGGTTGGTTTGCTGCCTCTTCTGGAATGTCATAGCAGTTACTACAGCTTGGATCAAGGGGGAAG
                                                         | ||   | |   ||  |  |||||  |    ||| |   || | |||||||| || |  || ||  ||    ||    | |   || | || ||  | ||    ||||||||||   || || ||||||||| |||| || |||||||||||||||||||| || ||||
gtacgtatagtgttctaggttaacatttttcatatgatacaaatacttgctctttcctgcattagtattcaaatttaaaggatcacagttttcaagcatgagatttgtatttgttgcttctttcatttggttgacaccatctagatgtaattcttgtttggcagGGTTGGTTCTTTGTCTTTTCTGGAATATCATCGCCGTTACTACAGCTTGGATCAAAGGAGAAG

upper sequence: GRMZM2G448715_T02 (Zea mays), 3'ss of exon 6
lower sequence: Vv12s0059g01930.t01 (Vitis vinifera), 3'ss of exon 5
-ttacagaggcaaagatcgaaggactagcaatt-taacttattaatttgtatatgatttattg-aatcatattatttcaacagttatatttggtattgaatagGGTTGGTTTGCTGCCTCTTCTGGAATGTCATAGCAGTTACTACAGCTTGGATCAAGGGGGAAG
 | |||      |  || |||  | ||| |  |   | | | ||||  |||| |    |     ||| |||| | |||   | || | |  | | |     ||| |||||    |||||    |||||| |  |||||||||| ||||||||||| ||||||||||
ataacactttacagtatagaacaa-tagtatctactattgaataataggtatttatccttccacaatgatataagttcttaaattttgt--gatgtcatgcagGTTTGGTACTTTGCCTTACATGGAATATTGTAGCAGTTACCACAGCTTGGATTAAGGGGGAAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|91048315|gb|EB158733.1|EB158733
EST:     ACCGAGTCACCTTCAAAGAATGCAATATGTTGCATTTGCCTCGTTTCTTG                         GGTTGGTTTGCTGCCTCTTCTGGAATGTCATAGCAGTTACTACAGCTTGGA
genomic: ACCGAGTCACCTTCAAAGAATGCAATATGTTGCATTTGCCTCGTTTCTTGgtatgctgct ... tattgaatagGGTTGGTTTGCTGCCTCTTCTGGAATGTCATAGCAGTTACTACAGCTTGGA
EST: gi|33770808|gb|CF273102.1|CF273102
EST:     ACCGAGTCACCTTCAAAGAATGCAATATGTTGCATTTGCCTCGTTTCTTG                         GGTTGGTTTGCTGCCTCTTCTGGAATGTCATAGCAGTTACTACAGCTTGGA
genomic: ACCGAGTCACCTTCAAAGAATGCAATATGTTGCATTTGCCTCGTTTCTTGgtatgctgct ... tattgaatagGGTTGGTTTGCTGCCTCTTCTGGAATGTCATAGCAGTTACTACAGCTTGGA
EST: gi|28188216|gb|CB179826.1|CB179826
EST:     ACCGAGTCACCTTCAAAGAATGCAATATGTTGCATTTGCCTCGTTTCTTG                         GGTTGGTTTGCTGCCTCTTCTGGAATGTCATACCAGTTACTACAGCTTGGA
genomic: ACCGAGTCACCTTCAAAGAATGCAATATGTTGCATTTGCCTCGTTTCTTGgtatgctgct ... tattgaatagGGTTGGTTTGCTGCCTCTTCTGGAATGTCATAGCAGTTACTACAGCTTGGA
EST: gi|76931490|gb|DV172743.1|DV172743
EST:     ACCGAGTCACCTTCAAAGAATGCAATATGTTGCATTTGCCTCGTTTCTTG                         GGTTGGTTTGCTGCCTCTTCTGGAATGTCATAGCAGTTACTACAGCTTGGA
genomic: ACCGAGTCACCTTCAAAGAATGCAATATGTTGCATTTGCCTCGTTTCTTGgtatgctgct ... tattgaatagGGTTGGTTTGCTGCCTCTTCTGGAATGTCATAGCAGTTACTACAGCTTGGA
EST: gi|211023203|gb|FK976157.1|FK976157
EST:     ACCGAGTCACCTTCAAAGAATGCAATATGTTGCATTTGCCTCGTTTCTTG                         GGTTTGGTT-GCTGCCCTCT-CTGGAATGTCATAGCAGTTACTACAGCTTG
genomic: ACCGAGTCACCTTCAAAGAATGCAATATGTTGCATTTGCCTCGTTTCTTGgtatgctgct ... tattgaatagGGTT-GGTTTGCTGCC-TCTTCTGGAATGTCATAGCAGTTACTACAGCTTG
EST: gi|37621984|gb|CF675037.1|CF675037
EST:     ACCGAGTCACCTTCAAAGAATGCAATATGTTGCATTTGCCTCGTTTCTTG                         GGTTGGTTTGCTGCCTCTTCTGGA
genomic: ACCGAGTCACCTTCAAAGAATGCAATATGTTGCATTTGCCTCGTTTCTTGgtatgctgct ... tattgaatagGGTTGGTTTGCTGCCTCTTCTGGA
EST: gi|89251197|gb|DY622983.1|DY622983
EST:     ACCGAGTCACCTTCAAAGAATGCAATATGTTGCATTTGCCTCGTTTCTTG                         GGTTGGTTTGCTGCCTCTTCTGGAATGTCATAGCAGTTACTACAGCTTGGA
genomic: ACCGAGTCACCTTCAAAGAATGCAATATGTTGCATTTGCCTCGTTTCTTGgtatgctgct ... tattgaatagGGTTGGTTTGCTGCCTCTTCTGGAATGTCATAGCAGTTACTACAGCTTGGA
EST: gi|37621886|gb|CF674939.1|CF674939
EST:     CCGAGTCACCTTCAAAGAATGCAATATGTTGCATTTGCCTCGTTTTCTTG                         GGTTGGTTTGCTGCCTCTTCTGGAATGTCATAGCAGTTACTACAGCTTGG
genomic: CCGAGTCACCTTCAAAGAATGCAATATGTTGCATTTGCCTCGTTT-CTTGgtatgctgct ... tattgaatagGGTTGGTTTGCTGCCTCTTCTGGAATGTCATAGCAGTTACTACAGCTTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtatatgatttattgaatcatattatttcaacagttatatttggtattgaatagGGTTGGTTTGCTGCCTCTTCTGGAATGTCATAGCAGTTACTACAGCTTGGATCAAGGGGGAAG
        atttattgaatcatat  TA-rich tract