Sequence
atgc intronic sequence ATGC exonic sequencegtaccgaatgcaccttctgctctgagcatattcttgctttggtaaagttgttttgattgtaaaacatggttcactgttcagGCTTCGCTTCGAGATAGCTTAGTGCTTCCGAATTGTGAAAGCATCTCCATGCCGTGGATGTTGGCTGAAAAGGATGATTGGGTACCTCGCAAGGATGCTC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G448241_T02 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os02g58110.1 (Oryza sativa), 3'ss of exon 4
gtaccgaatgcacc---ttctgctctgagcatattcttgctttggtaaagttgttttgattgtaaaacatggttcactgttcagGCTTCGCTTCGAGATAGCTTAGTGCTTCCGAATTGTGAAAGCATCTCCATGCCGTGGATGTTGGCTGAAAAGGATGATTGGGTACCTCGCAAGGATGCTC
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gtagtgaacacatcccatcctcttctgagcttgttacttctcttccaacctacatgttttaatcacacctt-tctgctgctcagGCTTCACTCCGTGACAGTTTGGTGCTCCCAAACTGTGAAAGTATTTCCATACCATTTATGTTGGCAGAAAAGGATGACTGGGTACCTCTCAAGGATGCAC
upper sequence: GRMZM2G448241_T02 (Zea mays), 3'ss of exon 6
lower sequence: GLYMA16G33490.1 (Glycine max), 3'ss of exon 7
-----------gtaccgaatgcaccttctgctctgagcatattcttgctttggtaaagttgttttgattgta-aaacatggttcactgtt-------cagGCTTCGCTTCGAGATAGCTTAGTGCTTCCGAATTGTGAAAGCATCTCCATGCCGTGGATGTTGGCTGAAAAGGATGATTGGGTACCTCGCAAGGATGCTC
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tatctactctagtactcaactgaagccatcttctgtgtatctttaagaaagtattagaatgtctttcacatgcaaacttaatttaatttctctcctgcagGCAGTAATCCGGGAAACTTTAGTGCTCCCAAATTGTGAAAGCATATGCATTCCATGGATGCTAGCTGAAAAGGACGATTGGGTTCCTAGGAGTGTTGCTC
upper sequence: GRMZM2G448241_T02 (Zea mays), 3'ss of exon 6
lower sequence: GLYMA09G28890.1 (Glycine max), 3'ss of exon 7
-------gtaccgaatgcaccttctgctctgagcatattcttgctttggtaaagttgtttt-----gattgtaaaacatggttcactgtt-------cagGCTTCGCTTCGAGATAGCTTAGTGCTTCCGAATTGTGAAAGCATCTCCATGCCGTGGATGTTGGCTGAAAAGGATGATTGGGTACCTCGCAAGGATGCTC
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tattctagtactcaactgaagccctctcttttgtatctttaagaaatgattagaatatctttccctaaaccctaaacttgattttatttttctcctgcagGCAGCGATCCGGGAAACTTTAGTGCTCCCAAATTGTGAAAGCATATGCATTCCATGGATGCTAGCCGAAAAGGATGATTGGGTTCCTAGGAGTGTCGCTC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.catattcttgctttggtaaagttgttttgattgtaaaacatggttcactgttcagGCTTCGCTTCGAGATAGCTTAGTGCTTCCGAATTGTGAAAGCATCTCCATGCCGTGGATGTTGGCTGAAAAGGATGATTGGGTACCTCGCAAGGATGCTC
ttttgat putative branch site (score: 4)
ttttgattgtaaaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaccgaatgcaccttctgctctgagcatattcttgctttggtaaagttgttttgattgtaaaacatggttcactgttcagGCTTCGCTTCGAGATAGCTTAGTGCTTCCGAATTGTGAAAGCATCTCCATGCCGTGGATGTTGGCTGAAAAGGATGATTGGGTACCTCGCAAGGATGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG