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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactttatcagttcaatatgtttcatattgtgcttagacaatgcacgctaccttgttaattgtggtgattttacttctttttttgaacatgtggtgattttacttctgtagGAGTACAACGCAAAACTATCTGATTTCGGTTTAGCAAAAGCTGGTCCTCACGGTGATAAAACTCATGTATCTACTCGGGTTGTTGGCACCTATGGTTATG

Basic information

species Zea mays
transcript GRMZM2G446189_T01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G446189_T01 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os06g07230.1 (Oryza sativa), 3'ss of exon 4
gtactttatcagttcaatatgtttcatattgtgcttagacaatgcacgctaccttgtta-attgtggtgattttacttctttttttgaacatgtggtgattttacttctgtagGAGTACAACGCAAAACTATCTGATTTCGGTTTAGCAAAAGCTGGTCCTCACGGTGATAAAACTCATGTATCTACTCGGGTTGTTGGCACCTATGGTTATG
||||| | ||   |||||   || || ||  |||| | | |||       || || | | |   |  |   ||   | || || |   |   ||||  ||| | ||| |  |||||||||| |||||||| || ||||| || ||||| |||||||||||||| || |||||||||||||| ||||| |||||||| || |||||||||||||
gtactatttcttatcaattcatt-cacatcatgctcata-aatatgttgcacattttcacaagattatttcttgcatgctattctaacagcagtggaaattctgcttatacagGAGTACAATGCAAAACTTTCAGATTTTGGGTTAGCGAAAGCTGGTCCTCAAGGCGATAAAACTCATGTCTCTACACGGGTTGTCGGTACCTATGGTTATG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taattgtggtgattttacttctttttttgaacatgtggtgattttacttctgtagGAGTACAACGCAAAACTATCTGATTTCGGTTTAGCAAAAGCTGGTCCTCACGGTGATAAAACTCATGTATCTACTCGGGTTGTTGGCACCTATGGTTATG
 tgttaat  putative branch site (score: 3)
                                         ttttacttct  putative PPT
           attttacttctttttt  TA-rich tract