1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtgagtatagtgcagcttgactcctgagtcctcacaggaactgtacgttttctcaactgacacggaatctgtggtagATCCGGGACGCGTACATGCTCAAGATCTTCGAGGACAACCAGACGCGGCTGCCCAGCTGGTGCAACGCGGCGGCGGACGGCCTCCCCTTCTGCCAGATCC
species | Zea mays |
transcript | GRMZM2G445478_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CCGGAGTCTTCGCTCCCTACACGGAGTCCATCCAGGTCACCGAGTTCACC ATCCGGGACGCGTACATGCTCAAGATCTTCGAGGACAACCAGACGCGGCTGEST: gi|149015788|gb|EE045483.2|EE045483
genomic: CCGGAGTCTTCGCTCCCTACACGGAGTCCATCCAGGTCACCGAGTTCACCgtgagtatag ... tctgtggtagATCCGGGACGCGTACATGCTCAAGATCTTCGAGGACAACCAGACGCGGCTG
EST: CCGGAGTCTTCGCTCCCTACACGGAGTCCATCCAGGTCACCGAGTTCACC ATCCGGGACGCGTACATGCTCAAGATCTTCGAGGACAACCAGACGCGGCTGEST: gi|76931485|gb|DV172738.1|DV172738
genomic: CCGGAGTCTTCGCTCCCTACACGGAGTCCATCCAGGTCACCGAGTTCACCgtgagtatag ... tctgtggtagATCCGGGACGCGTACATGCTCAAGATCTTCGAGGACAACCAGACGCGGCTG
EST: CCGGAGTCTTCGCTCCCTACACGGAGTCCATCCAGGTCACCGAGTTCACC ATCCGGGACGCGTACATGCTCAAGATCTTCGAGGACAACCAGACGCGGCTG
genomic: CCGGAGTCTTCGCTCCCTACACGGAGTCCATCCAGGTCACCGAGTTCACCgtgagtatag ... tctgtggtagATCCGGGACGCGTACATGCTCAAGATCTTCGAGGACAACCAGACGCGGCTG
cctgagtcctcacaggaactgtacgttttctcaactgacacggaatctgtggtagATCCGGGACGCGTACATGCTCAAGATCTTCGAGGACAACCAGACGCGGCTGCCCAGCTGGTGCAACGCGGCGGCGGACGGCCTCCCCTTCTGCCAGATCC
aactgac putative branch site (score: 63)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtatagtgcagcttgactcctgagtcctcacaggaactgtacgttttctcaactgacacggaatctgtggtagATCCGGGACGCGTACATGCTCAAGATCTTCGAGGACAACCAGACGCGGCTGCCCAGCTGGTGCAACGCGGCGGCGGACGGCCTCCCCTTCTGCCAGATCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG