1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtacgccctctcactcttgctcatctcttttgaagaaacatttacactgactttttctcaaacttgacagCTATGGTAGGATTTATTGCTTGCAGCTTGACAGAGTTAGTATGTCATTGAATCTATATCGCTTTTACCGTGATGCTGTTGTACAACAG
species | Zea mays |
transcript | GRMZM2G444692_T02 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GCAAACAACAAGCCTGTTCTAGCTGCAGATGATGTTTACATTGTAACAGT CTATGGTAGGATTTATTGCTTGCAGCTTGACAGAGTTAGTATGTCATTGAAEST: gi|22472312|gb|BU036792.1|BU036792
genomic: GCAAACAACAAGCCTGTTCTAGCTGCAGATGATGTTTACATTGTAACAGTgtacgccctc ... aacttgacagCTATGGTAGGATTTATTGCTTGCAGCTTGACAGAGTTAGTATGTCATTGAA
EST: GCAAACAACAAGCCTGTTCTAGTTGCAGATGATGTTTACATTGTAACAGT CTATGGTAGGATTTATTGCTTGCAGCTTGACAGAGTTAGTATGTCATTGAAEST: gi|211115212|gb|FL153546.1|FL153546
genomic: GCAAACAACAAGCCTGTTCTAGCTGCAGATGATGTTTACATTGTAACAGTgtacgccctc ... aacttgacagCTATGGTAGGATTTATTGCTTGCAGCTTGACAGAGTTAGTATGTCATTGAA
EST: GCAAACAACAAGCCTGTTCTAGCTGCAGATGATGTTTACATTGTAACAGT CTATGGTANGATTTATTGCTTGCAGCTTGACAGAGTTAGEST: gi|26558469|gb|CA830704.1|CA830704
genomic: GCAAACAACAAGCCTGTTCTAGCTGCAGATGATGTTTACATTGTAACAGTgtacgccctc ... aacttgacagCTATGGTAGGATTTATTGCTTGCAGCTTGACAGAGTTAG
EST: CAAACAACAAGCCTGTTCTAGCTGCAGATGATGTTTACATTGTCAACAGT CTATGGTAGGATTTATTGCTTGCAGCTTGACAGAGTTAGTATGTCATTGAEST: gi|87155752|gb|DY400541.1|DY400541
genomic: CAAACAACAAGCCTGTTCTAGCTGCAGATGATGTTTACATTGT-AACAGTgtacgccctc ... aacttgacagCTATGGTAGGATTTATTGCTTGCAGCTTGACAGAGTTAGTATGTCATTGA
EST: GCAAACAACAAGCCTGTTCTAGCTGCAGATGATGTTTACATTGTAACAGT CTATGGTAGGATTTATTGCTTGCAGCTTGACAGAGTTAGTATGTCATTGAA
genomic: GCAAACAACAAGCCTGTTCTAGCTGCAGATGATGTTTACATTGTAACAGTgtacgccctc ... aacttgacagCTATGGTAGGATTTATTGCTTGCAGCTTGACAGAGTTAGTATGTCATTGAA
cttgctcatctcttttgaagaaacatttacactgactttttctcaaacttgacagCTATGGTAGGATTTATTGCTTGCAGCTTGACAGAGTTAGTATGTCATTGAATCTATATCGCTTTTACCGTGATGCTGTTGTACAACAG
cactgac putative branch site (score: 2)
aaacattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgccctctcactcttgctcatctcttttgaagaaacatttacactgactttttctcaaacttgacagCTATGGTAGGATTTATTGCTTGCAGCTTGACAGAGTTAGTATGTCATTGAATCTATATCGCTTTTACCGTGATGCTGTTGTACAACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT