1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ctgggttacattcttattgctcacaaaatgggcagctgtgctcatattggtgtcttcacttaattaataccaatgttgttgatgcttttatgaaaaaaagGAAGCCGTTTCCCTTGGCAAATCAGAGGACACGCCAGAGTCTGCAGCTCGGAAATTGACAGAGATCGCTTATTCTCGTGGCAGCGCTGACAATATCACGT
species | Zea mays |
transcript | GRMZM2G442404_T03 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AATGCCTGGTTCTCGCTAGTGACGGGCTTTGGGATGTTGTGGAAAATGAG GAAGCCGTTTCCCTTGGCAAATCAGAGGACACGCCAGAGTCTGCAGCTCGGEST: gi|4776156|gb|AI665159.1|AI665159
genomic: AATGCCTGGTTCTCGCTAGTGACGGGCTTTGGGATGTTGTGGAAAATGAGgtaataactt ... tgaaaaaaagGAAGCCGTTTCCCTTGGCAAATCAGAGGACACGCCAGAGTCTGCAGCTCGG
EST: AATGCCTGGTTCTCGCTAGTGACGGGCTTTGGGATGTTGTGGAAAATGAG GAAGCCGTTTCCCTTGGCAAATCAGAGGACACGCCAGAGTCTGCAGCTCGGEST: gi|211024205|gb|FL472254.1|FL472254
genomic: AATGCCTGGTTCTCGCTAGTGACGGGCTTTGGGATGTTGTGGAAAATGAGgtaataactt ... tgaaaaaaagGAAGCCGTTTCCCTTGGCAAATCAGAGGACACGCCAGAGTCTGCAGCTCGG
EST: AATGCCTGGTTCTCGCTAGTGACGGGCTTTGGGATGTTGTGGAAAATGAG GAAGCCGTTTCCCTTGGCAAATCAGAGGACACGCCAGAGTCTGCAGCTCGGEST: gi|32863266|gb|CF002948.1|CF002948
genomic: AATGCCTGGTTCTCGCTAGTGACGGGCTTTGGGATGTTGTGGAAAATGAGgtaataactt ... tgaaaaaaagGAAGCCGTTTCCCTTGGCAAATCAGAGGACACGCCAGAGTCTGCAGCTCGG
EST: AATGCCTGGTTCTCGCTAGTGACGGGCTTTGGGATGTTGTGGAAAATGAG GAAGCCGTTTCCCTTGGCAAATCAGAGGACACGCCAGAGTCTGCAGCTCGGEST: gi|37375819|gb|CF624378.1|CF624378
genomic: AATGCCTGGTTCTCGCTAGTGACGGGCTTTGGGATGTTGTGGAAAATGAGgtaataactt ... tgaaaaaaagGAAGCCGTTTCCCTTGGCAAATCAGAGGACACGCCAGAGTCTGCAGCTCGG
EST: GCCTGGTTCTCG-TAAGTGACGGGCTTTGGGATGTTGTGGAAAATGAG GAAGCCGTTTCCCTTGGCAAATCAGAGGACACGCCAGAGTCTGCAGCTCGGEST: gi|32925505|gb|CF030317.1|CF030317
genomic: GCCTGGTTCTCGCT-AGTGACGGGCTTTGGGATGTTGTGGAAAATGAGgtaataactt ... tgaaaaaaagGAAGCCGTTTCCCTTGGCAAATCAGAGGACACGCCAGAGTCTGCAGCTCGG
EST: AATGCCTGGTTCTCGCTAGTGACGGGCTTTGGGATGTTGTGGAAAATGAG GAAGCCGTTTCCCTTGGCAAATCAGAGGACACGCCAGAGTCTGCAGCTCGGEST: gi|148973759|gb|EE024892.2|EE024892
genomic: AATGCCTGGTTCTCGCTAGTGACGGGCTTTGGGATGTTGTGGAAAATGAGgtaataactt ... tgaaaaaaagGAAGCCGTTTCCCTTGGCAAATCAGAGGACACGCCAGAGTCTGCAGCTCGG
EST: AATGCCTGGTTCTCGCTAGTGACGGGCTTTGGGATGTTGTGGAAAATGAG GAAGCCGTTTCCCTTGGCAAATCAGAGGACACGCCAGAGTCTGCAGCTCGGEST: gi|71307033|gb|DR789670.1|DR789670
genomic: AATGCCTGGTTCTCGCTAGTGACGGGCTTTGGGATGTTGTGGAAAATGAGgtaataactt ... tgaaaaaaagGAAGCCGTTTCCCTTGGCAAATCAGAGGACACGCCAGAGTCTGCAGCTCGG
EST: AATGCCTGGTTCTCGCTAGTGACGGGCTTTGGGATGTTGTGGAAAATGAG GAAGCCGTTTCCCTTGGCAAATCAGAGGACACGCCAGAGTCTGCAGCTCGGEST: gi|37374878|gb|CF623839.1|CF623839
genomic: AATGCCTGGTTCTCGCTAGTGACGGGCTTTGGGATGTTGTGGAAAATGAGgtaataactt ... tgaaaaaaagGAAGCCGTTTCCCTTGGCAAATCAGAGGACACGCCAGAGTCTGCAGCTCGG
EST: AATGCCTGGTTCTCGCTAGTGACGGGCTTTGGGATGTTGTGGAAAATGAG GAAGCCGTTTCCCTTGGCAAATCAGAGGACACGCCAGAGTCTGCAGCTCGGEST: gi|149051712|gb|EE155827.2|EE155827
genomic: AATGCCTGGTTCTCGCTAGTGACGGGCTTTGGGATGTTGTGGAAAATGAGgtaataactt ... tgaaaaaaagGAAGCCGTTTCCCTTGGCAAATCAGAGGACACGCCAGAGTCTGCAGCTCGG
EST: AATGCCTGGTTCTCGCTAGTGACGGGCTTTGGGATGTTGTGGAAAATGAG GAAGCCGTTTCCCTTGGCAAATCAGAGGACACGCCAGAGTCTGCAGCTCGG
genomic: AATGCCTGGTTCTCGCTAGTGACGGGCTTTGGGATGTTGTGGAAAATGAGgtaataactt ... tgaaaaaaagGAAGCCGTTTCCCTTGGCAAATCAGAGGACACGCCAGAGTCTGCAGCTCGG
attggtgtcttcacttaattaataccaatgttgttgatgcttttatgaaaaaaagGAAGCCGTTTCCCTTGGCAAATCAGAGGACACGCCAGAGTCTGCAGCTCGGAAATTGACAGAGATCGCTTATTCTCGTGGCAGCGCTGACAATATCACGT
cttttat CT-rich tract
ttttatgaaaaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctgggttacattcttattgctcacaaaatgggcagctgtgctcatattggtgtcttcacttaattaataccaatgttgttgatgcttttatgaaaaaaagGAAGCCGTTTCCCTTGGCAAATCAGAGGACACGCCAGAGTCTGCAGCTCGGAAATTGACAGAGATCGCTTATTCTCGTGGCAGCGCTGACAATATCACGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC