1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtatctactatccagacatgctcacaggtctggggtgcagtggtgagagttgtctcactagagtcaccagggccttatttgctgctggagcatctatggaatggcagggcctctgttttcagttttctgataaccttcctatgcttttgtagGCGTCCGTGCTGTGGAAGATGTGTGCGGATGATAGTGCTCTTTATTCCCAACTTTGAGCTAACTGTAGCCTCCTCGGTGTCAGGTAGATAATTATTTCTC
species | Zea mays |
transcript | GRMZM2G440951_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GCCTGCATTTCTGAAGAGCCTCCCTTCCCCTTGTAAAGTTACCTGTACAG GCGTCCGTGCTGTGGAAGATGTGTGCGGATGATAGTGCTCTTTATTCCCAAEST: gi|116813170|gb|EC855589.1|EC855589
genomic: GCCTGCATTTCTGAAGAGCCTCCCTTCCCCTTGTAAAGTTACCTGTACAGgtatctacta ... gcttttgtagGCGTCCGTGCTGTGGAAGATGTGTGCGGATGATAGTGCTCTTTATTCCCAA
EST: GCCTGCA-TTCTGAAGAGCCTCCCTTCCCCTTGTAAAGTTA-CTGTACAG GCGTCCGTGCTGTGGAAGATGTGTGCGGATGATAGTGCTCTTTATTCCCAA
genomic: GCCTGCATTTCTGAAGAGCCTCCCTTCCCCTTGTAAAGTTACCTGTACAGgtatctacta ... gcttttgtagGCGTCCGTGCTGTGGAAGATGTGTGCGGATGATAGTGCTCTTTATTCCCAA
ggaatggcagggcctctgttttcagttttctgataaccttcctatgcttttgtagGCGTCCGTGCTGTGGAAGATGTGTGCGGATGATAGTGCTCTTTATTCCCAACTTTGAGCTAACTGTAGCCTCCTCGGTGTCAGGTAGATAATTATTTCTC
tgataac putative branch site (score: 26)
ccttcctatgctttt CT-rich tract
ttttgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatctactatccagacatgctcacaggtctggggtgcagtggtgagagttgtctcactagagtcaccagggccttatttgctgctggagcatctatggaatggcagggcctctgttttcagttttctgataaccttcctatgcttttgtagGCGTCCGTGCTGTGGAAGATGTGTGCGGATGATAGTGCTCTTTATTCCCAACTTTGAGCTAACTGTAGCCTCCTCGGTGTCAGGTAGATAATTATTTCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC