1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtatagctgatactcctctgtggggtttatttcatttttctttccttatgtttgtcgatagtttggtgacacgcacattccctattttcagACAAAAGCTCTTGCCGAGAAGAACACGCGGGACCTGCTGGCTCAAAGAGAGCAAGCAGAGAAACAT
species | Zea mays |
transcript | GRMZM2G438895_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TAAGACATAAAGCAAGATTAGAGAGGCATCAACGCACAGCTGAGCGTGTG ACAAAAGCTCTTGCCGAGAAGAACACGCGGGACCTGCTGGCTCAAAGAGAGEST: gi|60346103|gb|DN213076.1|DN213076
genomic: TAAGACATAAAGCAAGATTAGAGAGGCATCAACGCACAGCTGAGCGTGTGgtatagctga ... ctattttcagACAAAAGCTCTTGCCGAGAAGAACACGCGGGACCTGCTGGCTCAAAGAGAG
EST: TAAGACATAAAGCAAGATTAGAGAGGCATCAACGCACAACTGAGCGTGTG ACAAAAGCTCTTGCCGAGAAGAACATGCGGGACCTGCTGGCTCAAAGAGAGEST: gi|67012495|gb|CO441244.1|CO441244
genomic: TAAGACATAAAGCAAGATTAGAGAGGCATCAACGCACAGCTGAGCGTGTGgtatagctga ... ctattttcagACAAAAGCTCTTGCCGAGAAGAACACGCGGGACCTGCTGGCTCAAAGAGAG
EST: TAAGACATAAAGCAAGATTAGAGAGGCATCAACGCACAGCTGAGCGTGTG ACAAAAGCTCTTGCCGAGAAGAACATGCGGGACCTGCTGGCTCAAAGAGAG
genomic: TAAGACATAAAGCAAGATTAGAGAGGCATCAACGCACAGCTGAGCGTGTGgtatagctga ... ctattttcagACAAAAGCTCTTGCCGAGAAGAACACGCGGGACCTGCTGGCTCAAAGAGAG
tttctttccttatgtttgtcgatagtttggtgacacgcacattccctattttcagACAAAAGCTCTTGCCGAGAAGAACACGCGGGACCTGCTGGCTCAAAGAGAGCAAGCAGAGAAACAT
cattccctattttc CT-rich tract
ttatgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatagctgatactcctctgtggggtttatttcatttttctttccttatgtttgtcgatagtttggtgacacgcacattccctattttcagACAAAAGCTCTTGCCGAGAAGAACACGCGGGACCTGCTGGCTCAAAGAGAGCAAGCAGAGAAACAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG