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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctgactggcaaaaaaaaaaaactccagattattcagttctctctacgcaccaaattcatgatcttggcgagtttaagcgtacctgatctctgcatttcggttgtttcgcagTATCTGAAGAACATACAGATAAAAGAAATCCCCATACTGGAAAGGTTCTCCCTTTTCATCTGTGTCGCGTTGGTATGGGCGTACGCTCAGATCCTCACTT

Basic information

species Zea mays
transcript GRMZM2G437859_T03
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G437859_T03 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os01g55500.4 (Oryza sativa), 3'ss of exon 6
gtctgactggcaaaaaaaaaaaactccagattattcagttctct--ctacgcaccaaattcatgatcttggcgagtttaagcgtacctgatctctgcatttcggttgtttcgcagTATCTGAAGAACATACAGATAAAAGAAATCCCCATACTGGAAAGGTTCTCCCTTTTCATCTGTGTCGCGTTGGTATGGGCGTACGCTCAGATCCTCACTT
    |  ||||||  ||      ||||| || ||  | |||| |  |||   |||| |||     |   | | |  |   || |     ||              |||||  ||||||||||||||  ||||||||| ||| || || |||||||| ||||||||||| ||||||||  |||||||||| ||||| || ||||| ||||||||| 
----gtttggcaagcaa------ctcca-atgatcgaattcttttgctagtgaccatatttgaagttgagtctaactcgtgcattgtcaatta------------tgtttttcagTATCTGAAGAATGTACAGATAAGAGATATTCCAATACTGGAGAGGTTCTCCCTGTTCATCTGCATCGCGTTGGTTTGGGCCTATGCTCAAATCCTCACTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|74244049|gb|DT651963.1|DT651963
EST:     GCGTTGAGATTGGCCTGCCAATGCTGATCCTCTTTGTCGTGCTGTCTCAG                         TATCTGAAGAACATACAGATAAAAGAAATCCCCATACTGGAAAGGTTCTCC
genomic: GCGTTGAGATTGGCCTGCCAATGCTGATCCTCTTTGTCGTGCTGTCTCAGgtctgactgg ... tgtttcgcagTATCTGAAGAACATACAGATAAAAGAAATCCCCATACTGGAAAGGTTCTCC
EST: gi|78084450|gb|DV512843.1|DV512843
EST:     GCGTTGAGATTGGCCTGCCAATGCTGATCCTCTTTGTCGTGCTGTCTCAG                         TATCTGAAGAACATACAGATAAAAGAAATCCCCATACTGGGAAAGGTTCTC
genomic: GCGTTGAGATTGGCCTGCCAATGCTGATCCTCTTTGTCGTGCTGTCTCAGgtctgactgg ... tgtttcgcagTATCTGAAGAACATACAGATAAAAGAAATCCCCATACTGG-AAAGGTTCTC
EST: gi|76923378|gb|DV169457.1|DV169457
EST:     GCGTTGAGATTGGCCTGCCAATGCTGATCCTCTTTGTCGTGCTGTCTCAG                         TATCTGAAGAACATACAGATAAAAGAAATCCCCATACTGGAAAGGTTCTCC
genomic: GCGTTGAGATTGGCCTGCCAATGCTGATCCTCTTTGTCGTGCTGTCTCAGgtctgactgg ... tgtttcgcagTATCTGAAGAACATACAGATAAAAGAAATCCCCATACTGGAAAGGTTCTCC
EST: gi|74238882|gb|DT646796.1|DT646796
EST:     GCGTTGAGATTGGCCTGCCAATGCTGATCCTCTTTGTCGTGCTGTCTCAG                         TATCTGAAGAACATACAGATAAAAGAAATCCCCATACTGGAAAGGGTTCTC
genomic: GCGTTGAGATTGGCCTGCCAATGCTGATCCTCTTTGTCGTGCTGTCTCAGgtctgactgg ... tgtttcgcagTATCTGAAGAACATACAGATAAAAGAAATCCCCATACTGGAAAGG-TTCTC
EST: gi|71310987|gb|DR791795.1|DR791795
EST:     GCGTTGAGATTGGCCTGCCAATGCTGATCCTCTTTGTCGTGCTGTCTCAG                         TATCTGAAGAACATACAGATAAAAGAAATCCCCATACTGGAAAGGTTCTCC
genomic: GCGTTGAGATTGGCCTGCCAATGCTGATCCTCTTTGTCGTGCTGTCTCAGgtctgactgg ... tgtttcgcagTATCTGAAGAACATACAGATAAAAGAAATCCCCATACTGGAAAGGTTCTCC
EST: gi|71438783|gb|DR819833.1|DR819833
EST:     GCGTTGAGATTGGCCTGCCAATGCTGATCCTCTTTGTCGTGCTGTCTCAG                         TATCTGAAGAACATACAGATAAAAGAAATCCCCATACTGGAAAGGTTCTCC
genomic: GCGTTGAGATTGGCCTGCCAATGCTGATCCTCTTTGTCGTGCTGTCTCAGgtctgactgg ... tgtttcgcagTATCTGAAGAACATACAGATAAAAGAAATCCCCATACTGGAAAGGTTCTCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catgatcttggcgagtttaagcgtacctgatctctgcatttcggttgtttcgcagTATCTGAAGAACATACAGATAAAAGAAATCCCCATACTGGAAAGGTTCTCCCTTTTCATCTGTGTCGCGTTGGTATGGGCGTACGCTCAGATCCTCACTT
                        acctgat  putative branch site (score: 4)
                                            ttgtttc  putative PPT
             agtttaa  TA-rich tract