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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtcttggccagagttgcttcctagttgttactatggataaacttgtgcttcctaatggtttgaatgtgttttctttatatagttctgttatacttatctatcgtgtgcttttagCTATATTCAGAGTCTCTTGCGCGCTTTCAAGGAGGCTCGCCATATATCTATCCATTGTATGGTCTGGGTGAGCTACCACAG

Basic information

species Zea mays
transcript GRMZM2G435373_T02
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G435373_T02 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os05g34540.1 (Oryza sativa), 3'ss of exon 6
gtaagtcttggccagagttgcttcctagttgttactatggataaacttgtgcttcctaatggtttgaatgtgttttctttatatagttctgttatacttatctatcgt-----gtgcttttagCTATATTCAGAGTCTCTTGCGCGCTTTCAAGGAGGCTCGCCATATATCTATCCATTGTATGGTCTGGGTGAGCTACCACAG
                    ||| ||||| ||| || |   ||    |||   | ||  |  | ||||| |  |||||||||  ||||| |||| | ||||   |  |     || ||| ||| ||||| ||||||| ||||| |||||||||||||| || || ||||| |||||| |||| |||||||||||||| ||||||
--------------------cttactagt-gttcctcttt-tagctgtgtcactgctgttt-tgtgaatattctttctttatggagttcagttacatttattggttatcttctgttcttgtagTTATATGCAGAGTCCCTTGCACGCTTTCAAGGAGGTTCACCTTATATTTATCCACTGTACGGTCTGGGTGAGCTGCCACAG

upper sequence: GRMZM2G435373_T02 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os05g23860.1 (Oryza sativa), 3'ss of exon 6
gtaagtcttggccagagttgcttcctagttgttactatggataaact-tgtgcttcctaatggttt--gaatgtgttttctttatatagttctgttatactt--atctatcgtgtgcttttagCTATATTCAGAGTCTCTTGCGCGCTTTCAAGGAGGCTCGCCATATATCTATCCATTGTATGGTCTGGGTGAGCTACCACAG
|||||| |||  || || | | |     |||||  ||    |   ||  |    ||||  || | |  |||| |   | ||||||  |||||  ||| | ||   |   |  | | ||| ||||||||| ||||||| ||||| || |||||||||||||| || ||||| |||||| | ||||| ||||||||||| ||||||
gtaagtattgatcaaagct-cctgtagattgttcgtagtcttctgctacggatatcctgctgttctctgaatattcatgctttatgaagttcaattacattttagtgctttatctacttgtagCTATATGCAGAGTCCCTTGCACGTTTTCAAGGAGGCTCACCTTATATTTATCCACTCTATGGGCTGGGTGAGCTGCCACAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32846965|gb|CD986646.1|CD986646
EST:     ATGATCGCTATCTTGATGAACCGGCACTTGATACAGTGAAAAGGATGAAA                         CTATATTCAGAGTCTCTTGCGCGCTTTCAAGGAGGCTCGCCATATATCTAT
genomic: ATGATCGCTATCTTGATGAACCGGCACTTGATACAGTGAAAAGGATGAAAgtaagtcttg ... gtgcttttagCTATATTCAGAGTCTCTTGCGCGCTTTCAAGGAGGCTCGCCATATATCTAT
EST: gi|6031345|gb|AW076202.1|AW076202
EST:     ATGATCGCTATCTTGATGAACCGGCACTTGATACAGNGAAAAGGATGAAA                         CTATATTCAGAGTCTCTTGCGCGCTTTCAAGGAGGCTCGCCATATATCTAT
genomic: ATGATCGCTATCTTGATGAACCGGCACTTGATACAGTGAAAAGGATGAAAgtaagtcttg ... gtgcttttagCTATATTCAGAGTCTCTTGCGCGCTTTCAAGGAGGCTCGCCATATATCTAT
EST: gi|32938598|gb|CF043417.1|CF043417
EST:     ATGATCGCTATCTTGATGAACCGGCACTTGATACAGTGAAAAGGATGAAA                         CTATATTCAGAGTCTCTTGCGCGCTTTCAAGGAGGCTCGCCATATATCTAT
genomic: ATGATCGCTATCTTGATGAACCGGCACTTGATACAGTGAAAAGGATGAAAgtaagtcttg ... gtgcttttagCTATATTCAGAGTCTCTTGCGCGCTTTCAAGGAGGCTCGCCATATATCTAT
EST: gi|33094579|gb|CF054573.1|CF054573
EST:     ATGATCGCTATCTTGATGAACCGGCACTTGATACAGTGAAAAGGATGAAA                         CTATATTCAGAGTCTCTTGCGCGCTTTCAAGGAGGCTCGCCATATATCTAT
genomic: ATGATCGCTATCTTGATGAACCGGCACTTGATACAGTGAAAAGGATGAAAgtaagtcttg ... gtgcttttagCTATATTCAGAGTCTCTTGCGCGCTTTCAAGGAGGCTCGCCATATATCTAT
EST: gi|32939909|gb|CF044728.1|CF044728
EST:     ATGATCGCTATCTTGATGAACCGGCACTTGATACAGTGAAAAGGATGAAA                         CTATATTCAGAGTCTCTTGCGCGCTTTCAAGGAGGCTCGCCATATATCTAT
genomic: ATGATCGCTATCTTGATGAACCGGCACTTGATACAGTGAAAAGGATGAAAgtaagtcttg ... gtgcttttagCTATATTCAGAGTCTCTTGCGCGCTTTCAAGGAGGCTCGCCATATATCTAT
EST: gi|32856054|gb|CD995735.1|CD995735
EST:     ATGATCGCTATCTTGATGAACTGGCACTTGATACAGTGAAAAGGATGAAA                         CTATATTCAGAGTCTCTTGCGCGCTTTCAAGGAGGCTCGCCATATATCTAT
genomic: ATGATCGCTATCTTGATGAACCGGCACTTGATACAGTGAAAAGGATGAAAgtaagtcttg ... gtgcttttagCTATATTCAGAGTCTCTTGCGCGCTTTCAAGGAGGCTCGCCATATATCTAT
EST: gi|32932660|gb|CF037472.1|CF037472
EST:     ATGATCGCTATCTTGATGAACCGGCACTTGATACAGTGAAAAGGATGAAA                         CTATATTCAGAGTCTCTTGCGCGCTTTCAAGGAGGCTCGCCATATATCTAT
genomic: ATGATCGCTATCTTGATGAACCGGCACTTGATACAGTGAAAAGGATGAAAgtaagtcttg ... gtgcttttagCTATATTCAGAGTCTCTTGCGCGCTTTCAAGGAGGCTCGCCATATATCTAT
EST: gi|47962286|gb|CN844995.1|CN844995
EST:     ATGATCGCTATCTTGATGAACCGGCACTTGATACAGTGAAAAGGATGAAA                         CTATATTCAGAGTCTCTTGCGCGCTTTCAAGGAGGCTCGCCATATATCTAT
genomic: ATGATCGCTATCTTGATGAACCGGCACTTGATACAGTGAAAAGGATGAAAgtaagtcttg ... gtgcttttagCTATATTCAGAGTCTCTTGCGCGCTTTCAAGGAGGCTCGCCATATATCTAT
EST: gi|211034436|gb|FL381555.1|FL381555
EST:     ATGATCGCTATCTTGATGAACCGGCACTTGATACAGTGAAAAGGATGAAA                         CTATATTCAGAGTCTCTTGCGCGCTTTCAAGGAGGCTCGCCATATATCTAT
genomic: ATGATCGCTATCTTGATGAACCGGCACTTGATACAGTGAAAAGGATGAAAgtaagtcttg ... gtgcttttagCTATATTCAGAGTCTCTTGCGCGCTTTCAAGGAGGCTCGCCATATATCTAT
EST: gi|211144299|gb|FL377140.1|FL377140
EST:     ATGATCGCTATCTTGATGAACCGGCACTTGATACAGTGAAAAGGATGAAA                         CTATATTCAGAGTCTCTTGCGCGCTTTCAAGGAGGCTCGCCATATATCTAT
genomic: ATGATCGCTATCTTGATGAACCGGCACTTGATACAGTGAAAAGGATGAAAgtaagtcttg ... gtgcttttagCTATATTCAGAGTCTCTTGCGCGCTTTCAAGGAGGCTCGCCATATATCTAT
EST: gi|211445979|gb|FL406296.1|FL406296
EST:     ATGATCGCTATCTTGATGAACCGGCACTTGATACAGTGAAAAGGATGAAA                         CTATATTCAGAGTCTCTTGCGCGCTTTCAAGGAGGCTCGCCATATATCTAT
genomic: ATGATCGCTATCTTGATGAACCGGCACTTGATACAGTGAAAAGGATGAAAgtaagtcttg ... gtgcttttagCTATATTCAGAGTCTCTTGCGCGCTTTCAAGGAGGCTCGCCATATATCTAT
EST: gi|211259815|gb|FL426651.1|FL426651
EST:     ATGATCGCTATCTTGATGAACCGGCACTTGATACAGTGAAAAGGATGAAA                         CTATATTCAGAGTCTCTTGCGCGCTTTCAAGGAGGCTCGCCATATATCTAT
genomic: ATGATCGCTATCTTGATGAACCGGCACTTGATACAGTGAAAAGGATGAAAgtaagtcttg ... gtgcttttagCTATATTCAGAGTCTCTTGCGCGCTTTCAAGGAGGCTCGCCATATATCTAT
EST: gi|32932658|gb|CF037470.1|CF037470
EST:     ATGATCGCTATCTTGATGAACCGGCACTTGATACAGTGAAAAGGATGAAA                         CTATATTCAGAGTCTCTTGCGCGCTTTCAAGGAGGCTCGCCATATATCTAT
genomic: ATGATCGCTATCTTGATGAACCGGCACTTGATACAGTGAAAAGGATGAAAgtaagtcttg ... gtgcttttagCTATATTCAGAGTCTCTTGCGCGCTTTCAAGGAGGCTCGCCATATATCTAT
EST: gi|211346475|gb|FL413228.1|FL413228
EST:     ATGATCGCTATCTTGATGAACCGGCACTTGATACAGTGAAAAGGATGAAA                         CTATATTCAGAGTCTCTTGCGCGCTTTCAAGGAGGCTCGCCATATATCTAT
genomic: ATGATCGCTATCTTGATGAACCGGCACTTGATACAGTGAAAAGGATGAAAgtaagtcttg ... gtgcttttagCTATATTCAGAGTCTCTTGCGCGCTTTCAAGGAGGCTCGCCATATATCTAT
EST: gi|33104315|gb|CF064275.1|CF064275
EST:     ATGATCGCTATCTTGATGAACCGGCACTTGATACAGTGAAAAGGATGAAA                         CTATATTCAGAGTCTCTTGCGCGCTTTCAAGGAGGCTCGCCATATATCTAT
genomic: ATGATCGCTATCTTGATGAACCGGCACTTGATACAGTGAAAAGGATGAAAgtaagtcttg ... gtgcttttagCTATATTCAGAGTCTCTTGCGCGCTTTCAAGGAGGCTCGCCATATATCTAT
EST: gi|32939179|gb|CF043998.1|CF043998
EST:     ATGATCGCTATCTTGATGAACCGGCACTTGATACAGTGAAAAGGATGAAA                         CTATATTCAGAGTCTCTTGCGCGCTTTCAAGGAGGCTCGCCATATATCTAT
genomic: ATGATCGCTATCTTGATGAACCGGCACTTGATACAGTGAAAAGGATGAAAgtaagtcttg ... gtgcttttagCTATATTCAGAGTCTCTTGCGCGCTTTCAAGGAGGCTCGCCATATATCTAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgaatgtgttttctttatatagttctgttatacttatctatcgtgtgcttttagCTATATTCAGAGTCTCTTGCGCGCTTTCAAGGAGGCTCGCCATATATCTATCCATTGTATGGTCTGGGTGAGCTACCACAG
                                              tgctttt  CT-rich tract
         ttttctttatatagtt  TA-rich tract