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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tatgtttgtcacagatttttcttaattgttgccaaagatgtttcattatttaattatgttttttaataacattccgtttgtacttctgatcttctttcagGCTATCTTGGGCTTTGTTTTGCTACTGGTGTACAACTGTTCTGGCCTATTCATTTCATTTCAAGTAAAAATGTCATCCAGATCTCGTAAAAAGGCTGCAA

Basic information

species Zea mays
transcript GRMZM2G430675_T02
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G430675_T01 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os10g30610.2 (Oryza sativa), 3'ss of exon 6
tatgtttgtcacagatttttcttaattgttgccaaagatgttt--cattatttaattatgttttttaataacattccgtttgtacttctgatcttctttcagGCTATCTTGGGCTTTGTTTTGCTACTGGTGTACAACTGTTCTGGCCTATTCATTTCATTTCAAGTAAAAATGTCATCCAGATCTCGTAAAAAGGCTGCAA
||  ||| | | ||| | || ||| |   |||  |  || ||   || |||||||| || |||| |  ||| ||| |     |  |  |  || |||| |||| ||||||| || ||||||| ||||||||||||||||| ||||  | ||||||   | ||| ||  ||||| |  |||| |||||||| |||||||||||
taccttt-ttatagagtattttta-tgaatgctcactattttctccactatttaatgatattttgtggtaaaatttctccgtttttaatcttcctcttgcagGTTATCTTGAGCGTTGTTTTACTACTGGTGTACAACTGCTCTGATCAATTCATCAAAATTCGAGCTAAAATATTGTCCAAATCTCGTAGAAAGGCTGCAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatttaattatgttttttaataacattccgtttgtacttctgatcttctttcagGCTATCTTGGGCTTTGTTTTGCTACTGGTGTACAACTGTTCTGGCCTATTCATTTCATTTCAAGTAAAAATGTCATCCAGATCTCGTAAAAAGGCTGCAA
                                     cttctgatcttctttc  CT-rich tract
     taattatgttttttaa  TA-rich tract