Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaactcccaactgaagcatttatacagtatcaagttgcattaaactgaatcaagattgatacgtgagcctcaaaacagGTGTACAACATGGTCAGGGCTTTCAAGGAGAAAAGCCTCGCTGTATCTGAGATAGGTCATGTACCCACGAGGAAAAGGACTAGACGGTTAAAGCGGTAGC

Basic information

species Zea mays
transcript GRMZM2G425986_T02
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G425986_T02 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os12g10910.1 (Oryza sativa), 3'ss of exon 2
gtaactcccaactgaagcatttatacagtatcaagttgcattaaactgaatcaagattgatacgtgagc-ctcaaaacagGTGTACAACATGGTCAGGGCTTTCAAGGAGAAAAGCCTCGCTGTATCTGAGATAGGTCATGTACCCACGAGGAAAAGGACTAGACGGTTAAAGCGGTAGC------
||| | | ||| |  |   |    | | |||    || |    |  |   | || ||||  |  |||   ||||   ||||||||||||||||||| ||| ||||||||||| ||    || | |   |||    | || |||||  |||||||||||| ||||||| | |||  | |        
gta-cgcacaaattcaatgtggtaaaaatat----ttcctcagagtttggttaaaattgtaagatgaatgctcacttcagGTGTACAACATGGTCAAGGCCTTCAAGGAGAAGAG----GCCGAAA--GAGCAGAGCCAAGTACCATCGAGGAAAAGGAGTAGACGGCTGAAGTAGCAAATCTTCA

upper sequence: GRMZM2G425986_T02 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os12g10850.1 (Oryza sativa), 3'ss of exon 6
gtaactcccaactgaagcatttatacagtatcaagttgcattaaactgaatcaagattgatacgtgagcct-caaaacagGTGTACAACATGGTCAGGGCTTTCAAGGAGAAAAGCCTCGCTGTATCTGAGATAGGTCATGTACCCACGAGGAAAAGGACTAGACGGTTAAAGCGGTAGC
||| | | ||| |  |   |    | | |||    || | | | | |  || || |||  ||  |||   | ||   ||||||||||||||||||| ||  ||||||||||||||    |||| |   |||    | || || || ||||||||||||| ||||||| | ||        
gta-cgcacaaattcaatgtggtaaaaatatt---tttcctcagagttgattaaaatttttagatgaattttcacttcagGTGTACAACATGGTCAAGGTCTTCAAGGAGAAAAG----GCTGAAA--GAGCAGAGCCAAGTGCCGACGAGGAAAAGGAGTAGACGGCTGAAATAA----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6563938|gb|AW231560.1|AW231560
EST:     TCAACGAGTCCTGCGTGGAGTCCATGGGATTAACATCGGGTATTCGGAAG                         GTGTACAACATGGTCAGGGCTTTCAAGGAGAAAAGCCTCGCTGTATCTGAG
genomic: TCAACGAGTCCTGCGTGGAGTCCATGGGATTAACATCGGGTATTCGGAAGgtaactccca ... ctcaaaacagGTGTACAACATGGTCAGGGCTTTCAAGGAGAAAAGCCTCGCTGTATCTGAG
EST: gi|78090906|gb|DV519280.1|DV519280
EST:     TCAACGAGTCCTGCGTGGAGTCCATGGGATTAACATCGGGTATTCGGAAG                         GTGTACAACATGGTCAGGGCTTTCAAGGAGAAAAGCCTCGCTGTATCTGAG
genomic: TCAACGAGTCCTGCGTGGAGTCCATGGGATTAACATCGGGTATTCGGAAGgtaactccca ... ctcaaaacagGTGTACAACATGGTCAGGGCTTTCAAGGAGAAAAGCCTCGCTGTATCTGAG
EST: gi|76285022|gb|DV024590.1|DV024590
EST:     TCAACGAGTCCTGCGTGGAGTCCATGGGATTAACATCGGGTATTCGGAAG                         GTGTACAACATGGTCAGGGCTTTCAAGGAGAAAAGCCTCGCTGTATCTGAG
genomic: TCAACGAGTCCTGCGTGGAGTCCATGGGATTAACATCGGGTATTCGGAAGgtaactccca ... ctcaaaacagGTGTACAACATGGTCAGGGCTTTCAAGGAGAAAAGCCTCGCTGTATCTGAG
EST: gi|76920657|gb|DV168269.1|DV168269
EST:     CAACGAGTCCTGCGTGGAGTCCATGGGATTAACATCGGGTATTCGGAAG                         GTGTACAACATGGTCAGGGCTTTCAAGGAGAAAAGCCTCGCTGTATCTGAG
genomic: CAACGAGTCCTGCGTGGAGTCCATGGGATTAACATCGGGTATTCGGAAGgtaactccca ... ctcaaaacagGTGTACAACATGGTCAGGGCTTTCAAGGAGAAAAGCCTCGCTGTATCTGAG
EST: gi|71299538|gb|DR785777.1|DR785777
EST:     TCAACGAGTCCTGCGTGGAGTCCATGGGATTAACATCGGGTATTCGGAAG                         GTGTACAACATGGTCAGGGCTTTCAAGGAGAAAAGCCTCGCTGTTTTTGAG
genomic: TCAACGAGTCCTGCGTGGAGTCCATGGGATTAACATCGGGTATTCGGAAGgtaactccca ... ctcaaaacagGTGTACAACATGGTCAGGGCTTTCAAGGAGAAAAGCCTCGCTGTATCTGAG
EST: gi|78103467|gb|DV521895.1|DV521895
EST:     TCAACGAGTCCTGCGTGGAGTCCATGGGATTAACATCGGGTATTCGGAAG                         GTGTACAACATGGTCAGGGCTTTCAAGGAGAAAAGCCTCGCTGTATCTGAG
genomic: TCAACGAGTCCTGCGTGGAGTCCATGGGATTAACATCGGGTATTCGGAAGgtaactccca ... ctcaaaacagGTGTACAACATGGTCAGGGCTTTCAAGGAGAAAAGCCTCGCTGTATCTGAG
EST: gi|211265288|gb|FL453264.1|FL453264
EST:     TCAACGAGTCCTGCGTGGAGTCCATGGGATTAACATCGGGTATTCGGAAG                         GTGTACAACATGGTCAGGGCTTTCAAGGAGAAAAGCCTCGCTGTATCTGAG
genomic: TCAACGAGTCCTGCGTGGAGTCCATGGGATTAACATCGGGTATTCGGAAGgtaactccca ... ctcaaaacagGTGTACAACATGGTCAGGGCTTTCAAGGAGAAAAGCCTCGCTGTATCTGAG
EST: gi|71323966|gb|DR798665.1|DR798665
EST:     TCAACGAGTCCTGCGTGGAGTCCATGGGATTAACATCGGGTATTCGGAAG                         GTGTACAACATGGTCAGGGCTTTCAAGGAGAAAAGCCTCGCTGTATCTGAG
genomic: TCAACGAGTCCTGCGTGGAGTCCATGGGATTAACATCGGGTATTCGGAAGgtaactccca ... ctcaaaacagGTGTACAACATGGTCAGGGCTTTCAAGGAGAAAAGCCTCGCTGTATCTGAG
EST: gi|89252623|gb|DY624409.1|DY624409
EST:     TCAACGAGTCCTGCGTGGAGTCCATGGGATTAACATCGGGTATTCGGAAG                         GTGTACAACATGGTCAGGGCTTTCAAGGAGAAAAGCCTCGCTGTATCTGAG
genomic: TCAACGAGTCCTGCGTGGAGTCCATGGGATTAACATCGGGTATTCGGAAGgtaactccca ... ctcaaaacagGTGTACAACATGGTCAGGGCTTTCAAGGAGAAAAGCCTCGCTGTATCTGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acagtatcaagttgcattaaactgaatcaagattgatacgtgagcctcaaaacagGTGTACAACATGGTCAGGGCTTTCAAGGAGAAAAGCCTCGCTGTATCTGAGATAGGTCATGTACCCACGAGGAAAAGGACTAGACGGTTAAAGCGGTAGC
                              gattgat  putative branch site (score: 4)
               attaaact  TA-rich tract