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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatagttaattggctagactactatccactatgaaagaaagaaattacttgtcaaactaatatatttgtgtgctaacttgctgatttgtcaaccttttctttagtgcagTTATGCAGCCAAGTTTGTAAAAGAATACATTGAGGAATCAAAACCTCTTTTTGCAGTTGGGGAATACTGGGATAGCTGTGAATATAGCCCCCCTGACTAC

Basic information

species Zea mays
transcript GRMZM2G422938_T02
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8516560|gb|BE123285.1|BE123285
EST:     CTTCGAAAATCAGGTGGTTTTCAAGATTTTCGCTTTGATTTCACGAAAGG                         NTATGCAGCCAAGGTTGTAAAAGAATACATTGAGGAATCAAAACCTCTTTT
genomic: CTTCGAAAATCAGTTGGTTTTCAAGATTTTCGCTTTGATTTCACGAAAGGgtaaatagtt ... tttagtgcagTTATGCAGCCAAGTTTGTAAAAGAATACATTGAGGAATCAAAACCTCTTTT
EST: gi|50327384|gb|CO522510.1|CO522510
EST:     CTTCGAAAATCAGTTGGTTTTCAAGATTTTCGCTTTGATTTCACGAAAGG                         TTATGCAGCCAAGTTTGTAAAAGAATACATTGAGGAATCAAAACCTCTTTT
genomic: CTTCGAAAATCAGTTGGTTTTCAAGATTTTCGCTTTGATTTCACGAAAGGgtaaatagtt ... tttagtgcagTTATGCAGCCAAGTTTGTAAAAGAATACATTGAGGAATCAAAACCTCTTTT
EST: gi|89761789|gb|DY689662.1|DY689662
EST:     CTTCGAAAATCAGTTGGTTTTCAAGATTTTCGCTTTGATTTCACGAAAGG                         TTATGCAGCCAAGTTTGTAAAAGAATACATTGAGGAATCAAAACCTCTTTT
genomic: CTTCGAAAATCAGTTGGTTTTCAAGATTTTCGCTTTGATTTCACGAAAGGgtaaatagtt ... tttagtgcagTTATGCAGCCAAGTTTGTAAAAGAATACATTGAGGAATCAAAACCTCTTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aactaatatatttgtgtgctaacttgctgatttgtcaaccttttctttagtgcagTTATGCAGCCAAGTTTGTAAAAGAATACATTGAGGAATCAAAACCTCTTTTTGCAGTTGGGGAATACTGGGATAGCTGTGAATATAGCCCCCCTGACTAC
                                  tcaaccttttcttt  CT-rich tract
     atatatttgt  TA-rich tract