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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacacttcatgattttaatacaatacacatcatgatttttctcttgctaatgtgcactatactattttttcttgcgtatctttcatgatatgtttagGGGTGCTCAAGAGAAAGAAAGCATCTAGTCCAGAGTATGCTCTCAAGTCGTCCTGCTCAAAAATAAATAAGTCTGA

Basic information

species Zea mays
transcript GRMZM2G421899_T03
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G421899_T03 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os02g48370.2 (Oryza sativa), 3'ss of exon 7
gtacacttcatgattttaatacaatacacatcatgatttttctcttgctaatgtgcactatactattttttcttgcgtatctttcatgatatgtttagGGGTGCTCAAGAGAAAGAAAGCATCTAGTCCAGAGTATGCTCTCAAGTCGTCCTGCTCAAAAATAAATAAGTCTGA
|||     |   | |   ||    ||    | || | |||||| |    | ||     | |  | ||||||||    ||| | |  ||| |  |||||| || |||||||| |||||||||||||||||||||| |||| |||||  |||  |  |||||||||| || ||  |
gtaagaacctaaagt---atttggtatgtttgataagttttctttcagcagtgca---tctgttgttttttctcatttatttgttttgacacatttagGAGTACTCAAGAGGAAGAAAGCATCTAGTCCAGAGTGTGCTATCAAGGTGTCTCGTACAAAAATAAACAAATCACA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttgctaatgtgcactatactattttttcttgcgtatctttcatgatatgtttagGGGTGCTCAAGAGAAAGAAAGCATCTAGTCCAGAGTATGCTCTCAAGTCGTCCTGCTCAAAAATAAATAAGTCTGA
  tgctaat  putative branch site (score: 2)
               tatactattttttctt  TA-rich tract