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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttcttatgacattgacttccatctatggcttcattctgaagactagctgtctgtgatatgtaaatgcatgctgttaacccgtgtttacatcctaatgattgcggactgggtgtgtgttgcagACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGTTCTATGGGGAAAATAAGTTACATTGCACCAGCTGGCCAGTACAACCTGC

Basic information

species Zea mays
transcript GRMZM2G421857_T03
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G421857_T04 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os02g07870.1 (Oryza sativa), 3'ss of exon 6
gtaagttcttatga-cattgacttccatct-atggcttcattctgaagactagctgtctgtgatatgtaaatgcatgctgttaacccgtgtttacatcctaatgattgcggactgggtgtgtgttgcagACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGTTCTATGGGGAAAATAAGTTACATTGCACCAGCTGGCCAGTACAACCTGC
|||||||   ||||   |||| || | ||| ||    | ||  |||| ||||    ||   |||| |||  |  |      | | |  |  | |  | |   || |   |   |  |  | | | ||||| |||   ||| || || |||||||| ||| | |||||||||||||| ||  |||||||||||||||||||||| || |||||||| || || | |||||
gtaagttaccatgaattttgagtttcgtcttatatggttatcatgaacactatgcatcaa-gata-gtagcttgagatctgtcatcattaatcatgtgcctttgctaaagttttctgactatatggcagATTGTCAATGAAAATACTTTGATGCAACACAAGGTTGCTCTTCCACCTGGCGCTATGGGGAAAATAAGTTACATCGCCCCAGCTGGTCAATATAGCCTGC

upper sequence: GRMZM2G421857_T04 (Zea mays), 3'ss of exon 7
lower sequence: AT1G78900.1 (Arabidopsis thaliana), 3'ss of exon 7
gtaagttcttatgacattgacttccatctatggcttcattctgaagactagctgt-ctgtgatatgtaaatgcatgctgttaac-ccgtgtttacatcctaatgattg-cggactggg-tgtgtgttgcagACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGTTCTATGGGGAAAATAAGTTACATTGCACCAGCTGGCCAGTACAACCTGC
|||||||  | ||   |   |||  ||||     || |    | |  |||  |   | || |        |      |||| || | | |  ||  |  |  |||  | |  | |    | ||   |||||||||| ||||||||||| |||||| | ||||  ||||| ||||| |||| | | |||||||| || | ||||||||| |||||||| || ||    ||  
gtaagtttat-tggtctcctctttaatctgct-tttgacaagggaatctatttacacagttaccgtggtgtttcccttgtttacactgggaatagttttttctgaaagtcaaattaaactttggaatgcagACTGTCTTTGAGAACACTTTGATGAATCACCTCGTTGCCCTTCCTCCGGATGCCATGGGGAAGATCACTTACATTGCTCCAGCTGGTCAATATTCGCTTA

upper sequence: GRMZM2G421857_T04 (Zea mays), 3'ss of exon 7
lower sequence: Vv09s0054g00890.t01 (Vitis vinifera), 3'ss of exon 6
--------------------gtaagttcttatgacattga-----cttccatctatggcttcattctgaagactagctgtctgtgatatgtaaat---------gcatgctg-ttaacccgtgtttacatcctaatgattgcggactgggtgtgtgtt-----gcagACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGTTCTATGGGGAAAATAAGTTACATTGCACCAGCTGGCCAGTACAACCTGC
                     |  ||| |||  |  ||||       || ||  |       |   |  | | ||  |   |     || |   |           ||| || ||  |  |  ||||  | |   | | | | ||   ||  | | ||     ||||||||| ||||||||||  || ||||||||||||||||| ||||| || | | ||||||| || || |  ||  ||||||||||||| || |||    || 
gtaagtttgttagcattgaacttggttattaaaaatttgaaggcctgtctattcaaaaacagaaaatttaaaataaataaatcaagaatattggtctcagttgaatatgatgattttcttgcatttagtttcatctaagtcctgatatggaatttttttctatgcagACTGTCTTTGAGAACAGTTTAATGCAGCACCATGTTGCCCTTCCTCCTGATGCTATGGGAAAGATCACGTATGTTGCACCAGCTGGTCAATACTCGTTGA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18649012|gb|BM497831.1|BM497831
EST:     GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT                         ACTGNTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTT
genomic: GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCTgtaagttctt ... tgtgttgcagACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTT
EST: gi|32925234|gb|CF030046.1|CF030046
EST:     GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT                         ACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGT
genomic: GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCTgtaagttctt ... tgtgttgcagACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGT
EST: gi|211155994|gb|FL123529.1|FL123529
EST:     GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT                         ACTGTTTTTGAGAACACATTGATGCAGCA
genomic: GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCTgtaagttctt ... tgtgttgcagACTGTTTTTGAGAACACATTGATGCAGCA
EST: gi|32848240|gb|CD987921.1|CD987921
EST:     GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT                         ACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGT
genomic: GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCTgtaagttctt ... tgtgttgcagACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGT
EST: gi|32910759|gb|CF015571.1|CF015571
EST:     GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT                         ACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGT
genomic: GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCTgtaagttctt ... tgtgttgcagACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGT
EST: gi|211152790|gb|FL123500.1|FL123500
EST:     GTGTTGGAGATGTCATCACAGGGTGGAGATCTATACGCT                         ACTGTTTTTGAGAAC
genomic: GTGTTGGAGATGTCATCACAGG-TGGAGATCTATACGCTgtaagttctt ... tgtgttgcagACTGTTTTTGAGAAC
EST: gi|148941860|gb|EC886839.2|EC886839
EST:     GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT                         ACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGT
genomic: GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCTgtaagttctt ... tgtgttgcagACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGT
EST: gi|32934325|gb|CF039137.1|CF039137
EST:     GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT                         ACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGT
genomic: GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCTgtaagttctt ... tgtgttgcagACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGT
EST: gi|149070206|gb|EE158608.2|EE158608
EST:     GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT                         ACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGT
genomic: GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCTgtaagttctt ... tgtgttgcagACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGT
EST: gi|211529163|gb|FL123429.1|FL123429
EST:     GTGTTGGAGATGTCATCACANGGTGGAGATCTATACGCT                         ACTGGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCCGG
genomic: GTGTTGGAGATGTCATCACA-GGTGGAGATCTATACGCTgtaagttctt ... tgtgttgcagACTG-TTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACC-GG
EST: gi|211541196|gb|FL123493.1|FL123493
EST:     GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT                         ACTGTTTTTGAGAACAC
genomic: GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCTgtaagttctt ... tgtgttgcagACTGTTTTTGAGAACAC
EST: gi|211532178|gb|FL123452.1|FL123452
EST:     GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT                         ACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGT
genomic: GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCTgtaagttctt ... tgtgttgcagACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGT
EST: gi|32924704|gb|CF029516.1|CF029516
EST:     GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT                         ACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGT
genomic: GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCTgtaagttctt ... tgtgttgcagACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGT
EST: gi|211152796|gb|FL123506.1|FL123506
EST:     GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT                         ACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGT
genomic: GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCTgtaagttctt ... tgtgttgcagACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGT
EST: gi|211529167|gb|FL123433.1|FL123433
EST:     GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT                         ACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGT
genomic: GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCTgtaagttctt ... tgtgttgcagACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGT
EST: gi|31355789|gb|CD440146.1|CD440146
EST:     GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT                         ACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGT
genomic: GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCTgtaagttctt ... tgtgttgcagACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGT
EST: gi|211535168|gb|FL123457.1|FL123457
EST:     GTGTTGGAGATGTCATCACAGGGTGGAGATCTATACGCT                         ACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCCGGG
genomic: GTGTTGGAGATGTCATCACAGG-TGGAGATCTATACGCTgtaagttctt ... tgtgttgcagACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACC-GGG
EST: gi|148968185|gb|EE019478.2|EE019478
EST:     GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT                         ACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGT
genomic: GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCTgtaagttctt ... tgtgttgcagACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGT
EST: gi|211152797|gb|FL123507.1|FL123507
EST:     GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT                         ACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCA
genomic: GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCTgtaagttctt ... tgtgttgcagACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCA
EST: gi|211152802|gb|FL123512.1|FL123512
EST:     GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT                         ACTGTTTTTGAGA-CACATTGATGC
genomic: GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCTgtaagttctt ... tgtgttgcagACTGTTTTTGAGAACACATTGATGC
EST: gi|18654719|gb|BM499524.1|BM499524
EST:     GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT                         ACTGTCTTTGAGAACACATTGATGCAGCACCATG
genomic: GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCTgtaagttctt ... tgtgttgcagACTGTTTTTGAGAACACATTGATGCAGCACCATG
EST: gi|211156004|gb|FL123539.1|FL123539
EST:     GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT                         ACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCCACCGGG
genomic: GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCTgtaagttctt ... tgtgttgcagACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCC-ACCGGG
EST: gi|148962822|gb|EE013742.2|EE013742
EST:     GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT                         ACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGT
genomic: GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCTgtaagttctt ... tgtgttgcagACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGT
EST: gi|6021119|gb|AW066047.1|AW066047
EST:     GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT                         ACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGT
genomic: GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCTgtaagttctt ... tgtgttgcagACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGT
EST: gi|211535166|gb|FL123455.1|FL123455
EST:     GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT                         ACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGT
genomic: GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCTgtaagttctt ... tgtgttgcagACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGT
EST: gi|148966031|gb|EE016965.2|EE016965
EST:     GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT                         ACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGT
genomic: GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCTgtaagttctt ... tgtgttgcagACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGT
EST: gi|87152921|gb|DY397710.1|DY397710
EST:     GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT                         ACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGT
genomic: GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCTgtaagttctt ... tgtgttgcagACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGT
EST: gi|32838453|gb|CD978131.1|CD978131
EST:     GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT                         ACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGT
genomic: GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCTgtaagttctt ... tgtgttgcagACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGT
EST: gi|211154396|gb|FL123515.1|FL123515
EST:     GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT                         ACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGT
genomic: GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCTgtaagttctt ... tgtgttgcagACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGT
EST: gi|211532174|gb|FL123448.1|FL123448
EST:     GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT                         ACTGTTTTTGAGAAC-CATTGATGCAGC
genomic: GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCTgtaagttctt ... tgtgttgcagACTGTTTTTGAGAACACATTGATGCAGC
EST: gi|211532167|gb|FL123441.1|FL123441
EST:     GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT                         ACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGT
genomic: GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCTgtaagttctt ... tgtgttgcagACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGT
EST: gi|149098348|gb|EE184321.2|EE184321
EST:     GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT                         ACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGT
genomic: GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCTgtaagttctt ... tgtgttgcagACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGT
EST: gi|32925687|gb|CF030499.1|CF030499
EST:     GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT                         ACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGT
genomic: GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCTgtaagttctt ... tgtgttgcagACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGT
EST: gi|149105608|gb|EE291151.2|EE291151
EST:     GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT                         ACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTTCC-CCGGG
genomic: GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCTgtaagttctt ... tgtgttgcagACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTT-CCACCGGG
EST: gi|148966043|gb|EE016977.2|EE016977
EST:     GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT                         ACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGT
genomic: GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCTgtaagttctt ... tgtgttgcagACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGT
EST: gi|18654718|gb|BM499523.1|BM499523
EST:     GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT                         ACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGT
genomic: GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCTgtaagttctt ... tgtgttgcagACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGT
EST: gi|149095258|gb|EE180885.2|EE180885
EST:     GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT                         ACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGT
genomic: GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCTgtaagttctt ... tgtgttgcagACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGT
EST: gi|6636981|gb|AW261253.1|AW261253
EST:     GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT                         ACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGT
genomic: GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCTgtaagttctt ... tgtgttgcagACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGT
EST: gi|211535175|gb|FL123464.1|FL123464
EST:     GTGGTTGGAGATGTCATCACAGGGTGGAGATCTATACGCT                         ACTGTTTTTGAGAACACATTGATGCAG
genomic: GTG-TTGGAGATGTCATCACAGG-TGGAGATCTATACGCTgtaagttctt ... tgtgttgcagACTGTTTTTGAGAACACATTGATGCAG
EST: gi|32921771|gb|CF026583.1|CF026583
EST:     GTGTTGGAGATGTCATTACAGGTGGAGATCTATACGCT                         ACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGT
genomic: GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCTgtaagttctt ... tgtgttgcagACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGT
EST: gi|32838516|gb|CD978194.1|CD978194
EST:     GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT                         ACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGT
genomic: GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCTgtaagttctt ... tgtgttgcagACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGT
EST: gi|211541200|gb|FL123497.1|FL123497
EST:     GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT                         ACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGT
genomic: GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCTgtaagttctt ... tgtgttgcagACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGT
EST: gi|211541195|gb|FL123492.1|FL123492
EST:     GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT                         ACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGT
genomic: GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCTgtaagttctt ... tgtgttgcagACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgctgttaacccgtgtttacatcctaatgattgcggactgggtgtgtgttgcagACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGTTCTATGGGGAAAATAAGTTACATTGCACCAGCTGGCCAGTACAACCTGC
                      tcctaat  putative branch site (score: 2)
                         taatgatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagttcttatgacattgacttccatctatggcttcattctgaagactagctgtctgtgatatgtaaatgcatgctgttaacccgtgtttacatcctaatgattgcggactgggtgtgtgttgcagACTGTTTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGTTCTATGGGGAAAATAAGTTACATTGCACCAGCTGGCCAGTACAACCTGC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG