1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaaatcatctttgtatgatctgatgattcatttttaactttgtttcttgtggatatttggagttctctagtgatgaaaaaacattatttcaccttgcataatcacccccctctcacttgacttgattctttatttattttatagGTTTGATATTGATGATAGATCGGTAGTCTCACATATATTTCATCATTGGGGCAAGAAGCAGGCATTTCAAAATCCAAAGAGATTACTTGAAAAG
species | Zea mays |
transcript | GRMZM2G421655_T02 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GCTCAGGCATGCCTTGCTAATGATTTC-TGAGAAAG GTTTGATATTGATGATAGATCGGTAGTCTCACATATATTTCATCATTGGGEST: gi|67025795|gb|CO454544.1|CO454544
genomic: GCTCAGGCATGCCTTGCTAATGATTTCTTGAG-AAGgtaaatcatc ... tattttatagGTTTGATATTGATGATAGATCGGTAGTCTCACATATATTTCATCATTGGG
EST: TCTTATCCAGAACAGGCTCAGGCATGCCTTGCTAATGATTTCTTGAGAAG GTTTGATATTGATGATAGATCGGTAGTCTCACATATATTTCATCATTGGGG
genomic: TCTTATCCAGAACAGGCTCAGGCATGCCTTGCTAATGATTTCTTGAGAAGgtaaatcatc ... tattttatagGTTTGATATTGATGATAGATCGGTAGTCTCACATATATTTCATCATTGGGG
caccttgcataatcacccccctctcacttgacttgattctttatttattttatagGTTTGATATTGATGATAGATCGGTAGTCTCACATATATTTCATCATTGGGGCAAGAAGCAGGCATTTCAAAATCCAAAGAGATTACTTGAAAAG
ttctttatttatttt CT-rich tract
ttgacttgattcttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaatcatctttgtatgatctgatgattcatttttaactttgtttcttgtggatatttggagttctctagtgatgaaaaaacattatttcaccttgcataatcacccccctctcacttgacttgattctttatttattttatagGTTTGATATTGATGATAGATCGGTAGTCTCACATATATTTCATCATTGGGGCAAGAAGCAGGCATTTCAAAATCCAAAGAGATTACTTGAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA