Sequence
atgc intronic sequence ATGC exonic sequencegtaaacttatttaatgtttttcctcattaaatttcacacataattgcattttagcaataacattaattgcattacagGGTTATCGAGTTCTGGTTGTCGAGCAAACTGAAACACCTGACCAGCTTGAACTTCGGCGTAAGGAGATGGGTATAAAGGACAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G421541_T02 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os09g24220.1 (Oryza sativa), 3'ss of exon 6
------gtaaactt-atttaatgtttttcctcattaaatttcacacataattgcattttagcaataacattaattgcattacagGGTTATCGAGTTCTGGTTGTCGAGCAAACTGAAACACCTGACCAGCTTGAACTTCGGCGTAAGGAGATGGGTATAAAGGACAAG
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gtcagatcatgtttgatatgattttattcttccatggaaaataattacatttttaataagctaacagagttggttgcatcacagGGTTATCGAGTTCTGGTTATCGAGCAGACTGAAACACCGGAGCAGCTTGACCTCCGCCGTAAAGAAACTGGTGTAAAAGACAAG
upper sequence: GRMZM2G421541_T02 (Zea mays), 3'ss of exon 6
lower sequence: GLYMA19G40350.1 (Glycine max), 3'ss of exon 6
----------------------------------------------------------gtaaacttatttaatgtttttcctcattaaatttcac-acataattgcattttagcaataacattaattgcattacagGGTTATCGAGTTCTGGTTGTCGAGCAAACTGAAACACCTGACCAGCTTGAACTTCGGCGTAAGGAGATGGGTATAAAGGACAAG
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gtttgtctcacaaatgactccccccccccccccccccccccctcttttcatctcagatacagactaattacttgtctaacaagccaacctgtaactaggggggaggaacttactaa--gtttccatggttgagcagGGTTATCGAGTTCTTGTTGTAGAGCAGACTGATACACCTGAACAGCTGGAGCTTCGTCGCAAGGAGAAGGGCTCTAAAGATAAG
upper sequence: GRMZM2G421541_T02 (Zea mays), 3'ss of exon 6
lower sequence: Vv07s0005g01370.t01 (Vitis vinifera), 3'ss of exon 6
-------------------------------gtaaacttatttaatgtttttcctca-----ttaaatttcacacataattgcatttt-agcaataacattaattg------------cattacagGGTTATCGAGTTCTGGTTGTCGAGCAAACTGAAACACCTGACCAGCTTGAACTTCGGCGTAAGGAGATGGGTATAAAGGACAAG
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gttgatcctattacatattttctatctcaaattagaattgttttccattggctttagagcacctctatttctttcatgaacccattttcatcaagaattcttactggagctccttggacagtgcagGGTTATCGTGTTCTTGTTGTAGAGCAAACAGAAACACCTGAGCAGCTTGAGCTTCGTCGCAAAGAGAAGGGTTCTAAGGACAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctcattaaatttcacacataattgcattttagcaataacattaattgcattacagGGTTATCGAGTTCTGGTTGTCGAGCAAACTGAAACACCTGACCAGCTTGAACTTCGGCGTAAGGAGATGGGTATAAAGGACAAG
attttagcaataacat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaaacttatttaatgtttttcctcattaaatttcacacataattgcattttagcaataacattaattgcattacagGGTTATCGAGTTCTGGTTGTCGAGCAAACTGAAACACCTGACCAGCTTGAACTTCGGCGTAAGGAGATGGGTATAAAGGACAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG