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gttagtttcatgcttttatgctcttaactttgtaacatctatgcataatgtggatatttatgcccttactttttagGGTGGAAAGAGAAGCAAGAAAAGCTGAAATGGAAATCGCAAAG
species | Zea mays |
transcript | GRMZM2G420865_T03 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CTGATTGAGCAACTAGAAGGCC-AATTTCTATCATCATTCGAGAAGAAAG GGTGGAAAGAGAAGCAAGAAAAGCTGAAATGGAAATCGCAAAGEST: gi|78090028|gb|DV518402.1|DV518402
genomic: CTGATTGAGCAACTAGAAGGCCAAATTTCTATCATCATTCGAGAAGAAAGgttagtttca ... tactttttagGGTGGAAAGAGAAGCAAGAAAAGCTGAAATGGAAATCGCAAAG
EST: GCCAAATTTCTATCATCATTCGAGAAGAAAG GGTGGAAAGAGAAGCAAGAAAAGCTGAAATGGAAATCGCAAAGEST: gi|211352888|gb|FL146172.1|FL146172
genomic: GCCAAATTTCTATCATCATTCGAGAAGAAAGgttagtttca ... tactttttagGGTGGAAAGAGAAGCAAGAAAAGCTGAAATGGAAATCGCAAAG
EST: CTGATTGAGCAACTAGAAGGCCAAATTTCTATCATCATTCGAGAAGAAAG GGTGGAAAGAGAAGCAAGAAAAGCTGAAATGGAAATCGCAAAGEST: gi|211352883|gb|FL146167.1|FL146167
genomic: CTGATTGAGCAACTAGAAGGCCAAATTTCTATCATCATTCGAGAAGAAAGgttagtttca ... tactttttagGGTGGAAAGAGAAGCAAGAAAAGCTGAAATGGAAATCGCAAAG
EST: CTGATTGAGCAACTAGAAGGCCAAATTTCTATCATCATTCGAGAAGAAAG GGTGGAAAGAGAAGCAAGAAAAGCTGAAATGGAAATCGCAAAGEST: gi|4887454|gb|AI677553.1|AI677553
genomic: CTGATTGAGCAACTAGAAGGCCAAATTTCTATCATCATTCGAGAAGAAAGgttagtttca ... tactttttagGGTGGAAAGAGAAGCAAGAAAAGCTGAAATGGAAATCGCAAAG
EST: CTGATTGAGCAACTAGAAGGCCAAATTTCTATCATCATTCGAGAAGAAAG GGTGGAAAGAGAAGCAAGAAAAGCTGAAATGGAAATCGCAAAGEST: gi|211352882|gb|FL146166.1|FL146166
genomic: CTGATTGAGCAACTAGAAGGCCAAATTTCTATCATCATTCGAGAAGAAAGgttagtttca ... tactttttagGGTGGAAAGAGAAGCAAGAAAAGCTGAAATGGAAATCGCAAAG
EST: CTGATTGAGCAACTAGAAGGCCAAATTTCTATCATCATTCGAGAAGAAAG GGTGGAAAGAGAAGCAAGAAAAGCTGAAATGGAAATCGCAAAGEST: gi|78027541|gb|DV495928.1|DV495928
genomic: CTGATTGAGCAACTAGAAGGCCAAATTTCTATCATCATTCGAGAAGAAAGgttagtttca ... tactttttagGGTGGAAAGAGAAGCAAGAAAAGCTGAAATGGAAATCGCAAAG
EST: CTGATTGAGCAACTAGAAGGCCAAATTTCTATCATCATTCGAGAAGAAAG GGTGGAAAGAGAAGCAAGAAAAGCTGAAATGGAAATCGCAAAGEST: gi|211352886|gb|FL146170.1|FL146170
genomic: CTGATTGAGCAACTAGAAGGCCAAATTTCTATCATCATTCGAGAAGAAAGgttagtttca ... tactttttagGGTGGAAAGAGAAGCAAGAAAAGCTGAAATGGAAATCGCAAAG
EST: CTGATTGAGCAACTAGAAGGCCAAATTTCTATCATCATTCGAGAAGAAAG GGTGGAAAGAGAAGCAAGAAAAGCTGAAATGGAAATCGCAAAGEST: gi|40337352|gb|CK371422.1|CK371422
genomic: CTGATTGAGCAACTAGAAGGCCAAATTTCTATCATCATTCGAGAAGAAAGgttagtttca ... tactttttagGGTGGAAAGAGAAGCAAGAAAAGCTGAAATGGAAATCGCAAAG
EST: CTGATTGAGCAACTAGAAGGCCAAATTTCTATCATCATTCGAGAAGAAAG GGTGGAAAGAGAAGCAAGAAAAGCTGAAATGGAAATCGCAAAGEST: gi|211352887|gb|FL146171.1|FL146171
genomic: CTGATTGAGCAACTAGAAGGCCAAATTTCTATCATCATTCGAGAAGAAAGgttagtttca ... tactttttagGGTGGAAAGAGAAGCAAGAAAAGCTGAAATGGAAATCGCAAAG
EST: CTGATTGAGCAACTAGAAGGCCAAATTTCTATCATCATTCGAGAAGAAAG GGTGGAAAGAGAAGCAAGAAAAGCTGAAATGGAAATCGCAAAGEST: gi|211352885|gb|FL146169.1|FL146169
genomic: CTGATTGAGCAACTAGAAGGCCAAATTTCTATCATCATTCGAGAAGAAAGgttagtttca ... tactttttagGGTGGAAAGAGAAGCAAGAAAAGCTGAAATGGAAATCGCAAAG
EST: CTGATTGAGCAACTAGAAGGCCAAATTTCTATCATCATTCGAGAAGAAAG GGTGGAAAGAGAAGCAAGAAAAGCTGAAATGGAAATCGCAAAGEST: gi|4887453|gb|AI677552.1|AI677552
genomic: CTGATTGAGCAACTAGAAGGCCAAATTTCTATCATCATTCGAGAAGAAAGgttagtttca ... tactttttagGGTGGAAAGAGAAGCAAGAAAAGCTGAAATGGAAATCGCAAAG
EST: CTGATTGAGCAACTAGAAGGCCAAATTTCTATCATCATTCGAGAAGAAAG GGTGGAAAGAGAAGCAAGAAAAGCTGAAATGGAAATCGCAAAGEST: gi|33100275|gb|CF060235.1|CF060235
genomic: CTGATTGAGCAACTAGAAGGCCAAATTTCTATCATCATTCGAGAAGAAAGgttagtttca ... tactttttagGGTGGAAAGAGAAGCAAGAAAAGCTGAAATGGAAATCGCAAAG
EST: CTGATTGAGCAACTAGAAGGCCAAATTTCTATCATCATTCGAGAAGAAAG GGTGGAAAGAGAAGCAAGAAAAGCTGAAATGGAAATCGCAAAGEST: gi|32931983|gb|CF036795.1|CF036795
genomic: CTGATTGAGCAACTAGAAGGCCAAATTTCTATCATCATTCGAGAAGAAAGgttagtttca ... tactttttagGGTGGAAAGAGAAGCAAGAAAAGCTGAAATGGAAATCGCAAAG
EST: CTGATTGAGCAACTAGAAGGCCAAATTTCTATCATCATTCGAGAAGAAAG GGTGGAAAGAGAAGCAAGAAAAGCTGAAATGGAAATCGCAAAG
genomic: CTGATTGAGCAACTAGAAGGCCAAATTTCTATCATCATTCGAGAAGAAAGgttagtttca ... tactttttagGGTGGAAAGAGAAGCAAGAAAAGCTGAAATGGAAATCGCAAAG
tcttaactttgtaacatctatgcataatgtggatatttatgcccttactttttagGGTGGAAAGAGAAGCAAGAAAAGCTGAAATGGAAATCGCAAAG
tgcccttacttttt CT-rich tract
ttacttttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagtttcatgcttttatgctcttaactttgtaacatctatgcataatgtggatatttatgcccttactttttagGGTGGAAAGAGAAGCAAGAAAAGCTGAAATGGAAATCGCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG