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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cgttctcttgcgttgctttaaaacgatggaccattcttggaccccattgtttatctacttataatgcttctcttcatcatttatgatatttgttcttcagGAAGAAGTTAGAAGTAAGCTAGCTTTGTTGGAGGTATGCCACCAAAATGAAATCCATAGAACCATTTCTGCATTTGCCCGACTTCAGAAATATGCAGAAT

Basic information

species Zea mays
transcript GRMZM2G417217_T02
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G417217_T02 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os02g38250.1 (Oryza sativa), 3'ss of exon 4
---------cgttctcttgcgttgctttaaaacgatggaccattcttggaccccattgtttatctacttataatgcttctcttcatcatttatgatatttgttcttcagGAAGAAGTTAGAAGTAAGCTAGCTTTGTTGGAGGTATGCCACCAAAATGAAATCCATAGAACCATTTCTGCATTTGCCCGACTTCAGAAATATGCAGAAT
          |||  | ||| ||  |||   || |||    |||  |  |  |   ||   |||   ||    || |  | ||| ||||  ||||| ||| |||||||||| ||||| |||||||| ||| ||   ||||||||||||||||||| |||||||||  ||||  ||||||||||||| ||||| |||||||| |||||||
tttggctgatgttg-catgcctttattttttaccatgatggatttattaaatctgctga--atcctttt----tgttcattttcttcat--atgattttttttcttcagGAGGAAGTCAGAAGTAAACTATCTGCATTGGAGGTATGCCACCAAAGTGAAATCCAGCGAACAGTTTCTGCATTTGCTCGACTACAGAAATACGCAGAAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attgtttatctacttataatgcttctcttcatcatttatgatatttgttcttcagGAAGAAGTTAGAAGTAAGCTAGCTTTGTTGGAGGTATGCCACCAAAATGAAATCCATAGAACCATTTCTGCATTTGCCCGACTTCAGAAATATGCAGAAT
                                           tttgttcttc  CT-rich tract
                              atcatttatgatattt  TA-rich tract