Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatcatgttgtaaaattgtttacctccttcgtttacgatgaaatagttgaatgctctcctacaattctttggatgtgatgcatttcttatttcctttcagAAGTTTAAATTCCATCTGATGTTAAATGCGGATAGGGAATTTCTTGCCCAGAAGACTGCCCCACATCGTGATTTTTACAATGTCAGGAAGGTTGACACTC

Basic information

species Zea mays
transcript GRMZM2G416667_T01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G416667_T03 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os05g28180.2 (Oryza sativa), 3'ss of exon 3
gtaatcatgttgtaaaattgtttacctccttcgtttacgatgaaatagttgaatgctctcctacaattctttggatgtgatgcatttcttatttcctttcagAAGTTTAAATTCCATCTGATGTTAAATGCGGATAGGGAATTTCTTGCCCAGAAGACTGCCCCACATCGTGATTTTTACAATGTCAGGAAGGTTGACACTC-----------------------------------
|||||||| |||| ||||  || ||| | |  | ||||  ||    | |  | |   |||||| |||||| |   |||||    ||| | |||||     |||| || ||||| ||| |||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||                                   
gtaatcatattgtcaaatcattgacccctt--gcttaccttggtg-aataaacttgactcctaaaattctgtatgtgtgaatgttttttcatttct----agaaattcaaatttcatttgatgttaaacgcggatagGGAGTTTCTTGCCCAGAAGACTGCACCACATCGTGATTTTTACAATGTCAGGAAGGTTGATACTCATGTACACCACTCAGCGTGCATGAATCAAAAACAC

upper sequence: GRMZM2G416667_T03 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os05g28180.1 (Oryza sativa), 3'ss of exon 3
gtaatcatgttgtaaaattgtttacctccttcgtttacgatgaaatagttgaatgctctcctacaattctttggatgtgatgcatttcttatttcctttcagAAGTTTAAATTCCATCTGATGTTAAATGCGGATAGGGAATTTCTTGCCCAGAAGACTGCCCCACATCGTGATTTTTACAATGTCAGGAAGGTTGACACTC
|||||||| |||| ||||  || ||| | |  | ||||  ||    | |  | |   |||||| |||||| |   |||||    ||| | |||||     |||| || ||||| ||| |||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
gtaatcatattgtcaaatcattgacccctt--gcttaccttggtg-aataaacttgactcctaaaattctgtatgtgtgaatgttttttcatttct----agAAATTCAAATTTCATTTGATGTTAAACGCGGATAGGGAGTTTCTTGCCCAGAAGACTGCACCACATCGTGATTTTTACAATGTCAGGAAGGTTGATACTC

upper sequence: GRMZM2G416667_T03 (Zea mays), 3'ss of exon 7
lower sequence: GLYMA03G07460.1 (Glycine max), 3'ss of exon 6
----gtaatcatgttgtaaaat-tgtttacct--ccttcgtttacgatgaaatagttgaatgctctcctacaattctttggatgtgatgcatttcttatttcctttcagAAGTTTAAATTCCATCTGATGTTAAATGCGGATAGGGAATTTCTTGCCCAGAAGACTGCCCCACATCGTGATTTTTACAATGTCAGGAAGGTTGACACTC
     ||   |  ||    ||| ||  || |   |    |  || | |   ||  || |||    | | | |||   |||  |||    || ||  | | |  |||||||| || ||  | ||| ||||||||||||||||||| ||||||||||| ||||| | ||| |||||||| || || || ||||| || || ||||||||||
gtacatatcgaatttactgaatatgagtaacaaactgcagcctatgcttgtat--tttaattacgtacaagaatcaattgt-tgtttgacaatttctgtattttttcagAAATTCAATCTTCATTTGATGTTAAATGCGGATAGAGAATTTCTTGCTCAGAAAAGTGCTCCACATCGAGACTTCTATAATGTTAGAAAAGTTGACACTC

upper sequence: GRMZM2G416667_T03 (Zea mays), 3'ss of exon 7
lower sequence: GLYMA01G29470.1 (Glycine max), 3'ss of exon 7
gtaatcatgttgtaaaattgtttacctccttcgtttacgatgaa-atagttgaatgctctcctacaattctttggatgtgatgcatttcttatttcctttcagAAGTTTAAATTCCATCTGATGTTAAATGCGGATAGGGAATTTCTTGCCCAGAAGACTGCCCCACATCGTGATTTTTACAATGTCAGGAAGGTTGACACTC
      |  |    || ||  | |        |    | |||    || || |||    | | | |||   |||  |||    || ||  | | |  |||||||| || ||  | ||| ||||| ||||||||||||| ||||||||||| ||||||| ||| |||||||| || || || ||||| || || ||||| ||||
----gtacatctctaatttactgaaacaaactgcagcctatgcttgtattttaattacatacaagaatcaattgt-tgtttgacaatttctgtatt-tttcagAAATTCAATCTTCATTTGATGCTAAATGCGGATAGAGAATTTCTTGCTCAGAAGAGTGCTCCACATCGAGACTTCTATAATGTTAGAAAAGTTGATACTC

upper sequence: GRMZM2G416667_T03 (Zea mays), 3'ss of exon 7
lower sequence: AT2G38280.2 (Arabidopsis thaliana), 3'ss of exon 6
gtaatcatgttgtaaaattgtttacctccttcgtttacgatgaaatagttgaatgctctcctacaattctttggatgtgat--gcatttct-tatttcctttcagAAGTTTAAATTCCATCTGATGTTAAATGCGGATAGGGAATTTCTTGCCCAGAAGACTGCCCCACATCGTGATTTTTACAATGTCAGGAAGGTTGACACTC
                       |     ||  ||||    || |    ||||||        ||| | |     ||| |   | || ||| | |||  |||||||| |||||  ||||| ||||| | ||||||||||  ||||||||||| || || | ||| ||||||||||||||||| || || ||||| || |||||||
---------------------gcaagagttttattta----gagaagaatgaatgtcaataagcaagtttcgtcttgttaacagtatgtctattttttgtttcagAAATTTAATCTCCATTTGATGCTTAATGCGGATAAAGAATTTCTTGCTCAAAAAAGTGCACCACATCGTGATTTTTATAACGTTAGGAAAGTCGACACTC

upper sequence: GRMZM2G416667_T03 (Zea mays), 3'ss of exon 7
lower sequence: Vv08s0105g00570.t01 (Vitis vinifera), 3'ss of exon 6
-----------------------------------------------------gtaatcatgttgtaaaattgtttacctccttcgtttacgatgaaatagttgaatgctctcctacaattctttggatgtgatgcatttcttattt-cctttcagAAGTTTAAATTCCATCTGATGTTAAATGCGGATAGGGAATTTCTTGCCCAGAAGACTGCCCCACATCGTGATTTTTACAATGTCAGGAAGGTTGACACTC
                                                      |  |||| |  | ||||   |   ||  ||| ||| |  |    |  ||  |     |  |  || |      || || ||  | | ||  || ||  |||||| || ||  | ||| ||||| | ||||||||||| ||||| ||||| ||||| | ||| ||||||||||| ||||| |||||||||||||| || || |
gtagatgctacttttctgtatttgattcacatatttgaattttttttttttgatttgtcatttattgaaatgtatgctctttttctttttcttttttctttttttacctctttttgtaaatgac--aatctggtggttgttttggttaccaatcagAAATTCAACCTTCATGTGATGCTTAATGCGGATAGAGAATTCCTTGCACAGAAAAGTGCACCACATCGTGACTTTTATAATGTCAGGAAGGTCGATACAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttgaatgctctcctacaattctttggatgtgatgcatttcttatttcctttcagAAGTTTAAATTCCATCTGATGTTAAATGCGGATAGGGAATTTCTTGCCCAGAAGACTGCCCCACATCGTGATTTTTACAATGTCAGGAAGGTTGACACTC
                                   catttcttatttcctt  CT-rich tract
                                    atttcttattt  TA-rich tract