1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaaggacgcgcatcctgctcctgtcttctctgcattgtcagctgcgtgcttggtagtaatatgacctgtttgttttgtcttgtgatccaaacatacagGTCTTTGAGGGTGAGCGCAGCATGACCAAGGACTGCCGTCTTCTGGGCAAGTTCGACCTCAATGGCATTCCGTCAGCTCCGAG
species | Zea mays |
transcript | GRMZM2G415007_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CGCAGGTGTTCACCACCTACCAGGACCAGCAGACCACTGTCTCCATCCAG GTCTTTGAGGGTGAGCGCAGCATGACCAAGGACTGCCGTCTTCTGGGCAAGEST: gi|14529531|gb|BI096664.1|BI096664
genomic: CGCAGGTGTTCACCACCTACCAGGACCAGCAGACCACTGTCTCCATCCAGgtaaggacgc ... aaacatacagGTCTTTGAGGGTGAGCGCAGCATGACCAAGGACTGCCGTCTTCTGGGCAAG
EST: CGCAGGTGTTCACCACCTACCAGGACCAGCAGACCACTGTCTCCATCCAG GTCTTTGAGGGTGAGCGCAGCATGACCAAGGACTGCCGTCTTCTGGGCAAGEST: gi|87153886|gb|DY398675.1|DY398675
genomic: CGCAGGTGTTCACCACCTACCAGGACCAGCAGACCACTGTCTCCATCCAGgtaaggacgc ... aaacatacagGTCTTTGAGGGTGAGCGCAGCATGACCAAGGACTGCCGTCTTCTGGGCAAG
EST: CGCAGGTGTTCACCACCTACCAGGACCAGCAGACCACTGTCTCCATCCAG GTCTTTGAGGGTGAGCGCAGCATGACCAAGGACTGCCGTCTTCTGGGCAAGEST: gi|19770559|gb|BQ035280.1|BQ035280
genomic: CGCAGGTGTTCACCACCTACCAGGACCAGCAGACCACTGTCTCCATCCAGgtaaggacgc ... aaacatacagGTCTTTGAGGGTGAGCGCAGCATGACCAAGGACTGCCGTCTTCTGGGCAAG
EST: CGCAGGTGTTCACCACCTACCAGGACCAGCAGACCACTGTCTCCATCCAG GTCTTTGAGGGTGAGCGCAGCATGACCAAGGACTGCCGTCTTCTGGGCAAGEST: gi|86855991|gb|DY307002.1|DY307002
genomic: CGCAGGTGTTCACCACCTACCAGGACCAGCAGACCACTGTCTCCATCCAGgtaaggacgc ... aaacatacagGTCTTTGAGGGTGAGCGCAGCATGACCAAGGACTGCCGTCTTCTGGGCAAG
EST: CGCAGGTGTTCACCACCTACCAGGACCAGCAGACCACTGTCTCCATCCAG GTCTTTGAGGGTGAGCGCAGCATGACCAAGGACTGCCGTCTTCTGGGCAAGEST: gi|211320987|gb|FL255017.1|FL255017
genomic: CGCAGGTGTTCACCACCTACCAGGACCAGCAGACCACTGTCTCCATCCAGgtaaggacgc ... aaacatacagGTCTTTGAGGGTGAGCGCAGCATGACCAAGGACTGCCGTCTTCTGGGCAAG
EST: CGCAGGTGTTCACCACCTACCAGGACCAGCAGACCACTGTCTCCATCCAG GTCTTTGAGGGTGAGCGCAGCATGACCAAGGACTGCCGTCTTCTGGGCAAGEST: gi|15198951|gb|BI423577.1|BI423577
genomic: CGCAGGTGTTCACCACCTACCAGGACCAGCAGACCACTGTCTCCATCCAGgtaaggacgc ... aaacatacagGTCTTTGAGGGTGAGCGCAGCATGACCAAGGACTGCCGTCTTCTGGGCAAG
EST: CGCAGGTGTTCACCACCTACCAGGACCAGCAGACCACTGTCTCCATCCAG GTCTTTGAGGGTGAGCGCAGCATGACCAAGGACTGCCGTCTTCTGGGCAAG
genomic: CGCAGGTGTTCACCACCTACCAGGACCAGCAGACCACTGTCTCCATCCAGgtaaggacgc ... aaacatacagGTCTTTGAGGGTGAGCGCAGCATGACCAAGGACTGCCGTCTTCTGGGCAAG
gcgtgcttggtagtaatatgacctgtttgttttgtcttgtgatccaaacatacagGTCTTTGAGGGTGAGCGCAGCATGACCAAGGACTGCCGTCTTCTGGGCAAGTTCGACCTCAATGGCATTCCGTCAGCTCCGAG
tagtaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaggacgcgcatcctgctcctgtcttctctgcattgtcagctgcgtgcttggtagtaatatgacctgtttgttttgtcttgtgatccaaacatacagGTCTTTGAGGGTGAGCGCAGCATGACCAAGGACTGCCGTCTTCTGGGCAAGTTCGACCTCAATGGCATTCCGTCAGCTCCGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC