1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...ttcgggttcgggtttcgggttttttgcccagccctacgtatagtgctttgcttattatccacatccactcagggccgctcctttctgatgcttcgtgcagGACGTTCGTGGTAACGGGCAAGATCCTGAGTCAGAGATTGTCCAAGCCTGCAGAAGT
species | Zea mays |
transcript | GRMZM2G413857_T02 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GGACACGTGGGTTAGTCAAAGAAAGTTTGCTTCAGCGGTACTTCAGCATG GGACGTTCGTGGTAACGGGGCAAGATCCTGAGTCAGAGATTGTCCAAGCCCEST: gi|26457201|gb|CA828784.1|CA828784
genomic: GGACACGTGGGTTAGTCAAGGAAAGTTTGCTTCAGCGGTACTTCAGCATGgtacttttga ... cttcgtgcagG-ACGTTCGTGGTAACGGG-CAAGATCCTGAGTCAGAGATTGTCCAAGCC-
EST: GGACACGTGGGTTAGTCAAGGAAAGTTTGCTTCAGCGGTACTTCAGCATG GACGTTCGTGGTAACGGGCAAGATCCTGAGTCAGAGATTGTCCAAGCCTGCEST: gi|21395240|gb|BQ539670.1|BQ539670
genomic: GGACACGTGGGTTAGTCAAGGAAAGTTTGCTTCAGCGGTACTTCAGCATGgtacttttga ... cttcgtgcagGACGTTCGTGGTAACGGGCAAGATCCTGAGTCAGAGATTGTCCAAGCCTGC
EST: GGACACGTGGGTTAGTCAAGGAAAGTTTGCTTCAGCGGTACTTCAGCATG GACGTTCGTGGTAACGGGCAAGATCCTGAGTCAGAGATTGTCCAAGCCTGCEST: gi|19351457|gb|BM895989.1|BM895989
genomic: GGACACGTGGGTTAGTCAAGGAAAGTTTGCTTCAGCGGTACTTCAGCATGgtacttttga ... cttcgtgcagGACGTTCGTGGTAACGGGCAAGATCCTGAGTCAGAGATTGTCCAAGCCTGC
EST: GGACACGTGGGTTAGTCAAGGAAAGTTTGCTTCAGCGGTACTTCAGCATG GACGTTCGTGGTAACGGGCAAGATCCTGAGTCAGAGATTGTCCAAGCCTGCEST: gi|67011356|gb|CO440105.1|CO440105
genomic: GGACACGTGGGTTAGTCAAGGAAAGTTTGCTTCAGCGGTACTTCAGCATGgtacttttga ... cttcgtgcagGACGTTCGTGGTAACGGGCAAGATCCTGAGTCAGAGATTGTCCAAGCCTGC
EST: GGACACGTGGGTTAGTCAAGGAAAGTTTGCTTCAGCGGTACTTCAGCATG GACGTTCGTGGTAACGGGCAAGATCCTGAGTCAGAGATTGTCCAAGCCTGC
genomic: GGACACGTGGGTTAGTCAAGGAAAGTTTGCTTCAGCGGTACTTCAGCATGgtacttttga ... cttcgtgcagGACGTTCGTGGTAACGGGCAAGATCCTGAGTCAGAGATTGTCCAAGCCTGC
ctttgcttattatccacatccactcagggccgctcctttctgatgcttcgtgcagGACGTTCGTGGTAACGGGCAAGATCCTGAGTCAGAGATTGTCCAAGCCTGCAGAAGT
ttctgat putative branch site (score: 3)
ttattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcgggttcgggtttcgggttttttgcccagccctacgtatagtgctttgcttattatccacatccactcagggccgctcctttctgatgcttcgtgcagGACGTTCGTGGTAACGGGCAAGATCCTGAGTCAGAGATTGTCCAAGCCTGCAGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT