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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

cGTTTCTGGCGATTTTCTGCTGCTTCTTACCCAGACCTGATAGATGCGTTGCCGAAAAATCCACTTACATCTGTAAATAGGACAGTTAATGGCAGTTTTGG

Basic information

species Zea mays
transcript GRMZM2G407044_T02
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G407044_T02 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os02g39570.5 (Oryza sativa), 3'ss of exon 5
-------------------------------------------------------------------------------------------------------------------------cGTTTCTGGCGATTTTCTGCTGCTTCTTACCCAGACCTGATAGATGCGTTGCCGAAAAATCCACTTACATCTGTAAATAGGACAGTTAATGGCAGTTTTGG
                                                                                                                         || |||||| ||||||||||||||||||||||||| || ||||| || ||||| |||||| | |                                     
gtattttcttgaccattttctatttgcatttatcatgcatgcatacatgtgttattcacagtgctgactcttttttccccctcagATTGCTTTGAGACGTGAAAAAATTGGAGCAACTGCCCGCTTCTGGGGATTTTCTGCTGCTTCTTACCCAGATCTCATAGAGGCATTGCCCAAAAATTCTC-------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149075260|gb|EE163764.2|EE163764
EST:     ATTGCTTTGAGACGTGAAAGGATTGGTGCAACAGCC                         C
genomic: ATTGCTTTGAGACGTGAAAGGATTGGTGCAACAGCCc ... c-c ... cGTTTCTGGCGA
EST: gi|149075260|gb|EE163764.2|EE163764
EST:     ATTGCTTTGAGACGTGAAAGGATTGGTGCAACAGCC                         C
genomic: ATTGCTTTGAGACGTGAAAGGATTGGTGCAACAGCCc ... c-c ... cGTTTCTGGCGA
EST: gi|149087824|gb|EE177122.2|EE177122
EST:     ATTGCTTTGAGACGTGAAAGGATTGGTGCAACAGCC                         GTTTCTGGCGATTTTCTGCTGCTTCTTACCCAGACCTGATAGATGCGTTGC
genomic: ATTGCTTTGAGACGTGAAAGGATTGGTGCAACAGCCc ... cGTTTCTGGCGATTTTCTGCTGCTTCTTACCCAGACCTGATAGATGCGTTGCCGAAAAATCCACTTACAT
EST: gi|33098451|gb|CF058411.1|CF058411
EST:     ATTGCTTTGAGACGTGAAAGGATTGGTGCAACAGCC                         C
genomic: ATTGCTTTGAGACGTGAAAGGATTGGTGCAACAGCCc ... c-c ... cGTTTCTGGCGA
EST: gi|33098451|gb|CF058411.1|CF058411
EST:     ATTGCTTTGAGACGTGAAAGGATTGGTGCAACAGCC                         C
genomic: ATTGCTTTGAGACGTGAAAGGATTGGTGCAACAGCCc ... c-c ... cGTTTCTGGCGA
EST: gi|78122764|gb|DV541148.1|DV541148
EST:     ATTGCTTTGAGACGTGAAAGGATTGGTGCAACAGCC                         C
genomic: ATTGCTTTGAGACGTGAAAGGATTGGTGCAACAGCCc ... c-c ... cGTTTCTGGCGA
EST: gi|78122764|gb|DV541148.1|DV541148
EST:     ATTGCTTTGAGACGTGAAAGGATTGGTGCAACAGCC                         C
genomic: ATTGCTTTGAGACGTGAAAGGATTGGTGCAACAGCCc ... c-c ... cGTTTCTGGCGA
EST: gi|71435773|gb|DR816823.1|DR816823
EST:     ATTGCTTTGAGACGTGAAAGGATTGGTGCAACAGCC                         C
genomic: ATTGCTTTGAGACGTGAAAGGATTGGTGCAACAGCCc ... c-c ... cGTTTCTGGCGA
EST: gi|71435773|gb|DR816823.1|DR816823
EST:     ATTGCTTTGAGACGTGAAAGGATTGGTGCAACAGCC                         C
genomic: ATTGCTTTGAGACGTGAAAGGATTGGTGCAACAGCCc ... c-c ... cGTTTCTGGCGA
EST: gi|148949305|gb|EC894756.2|EC894756
EST:     ATTGCTTTGAGACGTGAAAGGATTGGTGCAACAGCC                         C
genomic: ATTGCTTTGAGACGTGAAAGGATTGGTGCAACAGCCc ... c-c ... cGTTTCTGGCGA
EST: gi|148949305|gb|EC894756.2|EC894756
EST:     ATTGCTTTGAGACGTGAAAGGATTGGTGCAACAGCC                         C
genomic: ATTGCTTTGAGACGTGAAAGGATTGGTGCAACAGCCc ... c-c ... cGTTTCTGGCGA