1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtatgcctgatttttttgcccttaacgctgtaaattattgttactagtgacctgatcctcttgtttttagGTAAAATACCATATTTTACACTGCCGCCTAAAAGAGATGCTGGGGAGGACTCAGATGCAGTGATTATATCCGAGGATGGGAAAGAATTTAATATCGATGA
species | Zea mays |
transcript | GRMZM2G403149_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AGTGGATGTTGAAGCTGCAGCGAGAATTGTGCTTCATGACTGGAATGAAG GTAAAATACCATATTTTACACTGCCGCCTAAAAGAGATGCTGGGGAGGACTEST: gi|23199792|gb|BU582357.1|BU582357
genomic: AGTGGATGTTGAAGCTGCAGCGAGAATTGTGCTTCATGACTGGAATGAAGgtatgcctga ... ttgtttttagGTAAAATACCATATTTTACACTGCCGCCTAAAAGAGATGCTGGGGAGGACT
EST: AGTGGATGTTGAAGCTGCAGCGAGAATTGTGCTTCATGACTGGAATGAAG GTAAAATACCATATTTTACACTGCCGCCTAAAAGAGATGCTGGGGAGGACTEST: gi|26559299|gb|CA831534.1|CA831534
genomic: AGTGGATGTTGAAGCTGCAGCGAGAATTGTGCTTCATGACTGGAATGAAGgtatgcctga ... ttgtttttagGTAAAATACCATATTTTACACTGCCGCCTAAAAGAGATGCTGGGGAGGACT
EST: AGTGGATGTTGAAGCTGCAGCGAGAATTGTGCTTCATGACTGGAATGAAG GTAAAATACCATATTTTACACTGCCGCCTAAAAGAGATGCTGGGGAGGACTEST: gi|60343046|gb|DN210019.1|DN210019
genomic: AGTGGATGTTGAAGCTGCAGCGAGAATTGTGCTTCATGACTGGAATGAAGgtatgcctga ... ttgtttttagGTAAAATACCATATTTTACACTGCCGCCTAAAAGAGATGCTGGGGAGGACT
EST: AGTGGATGTTGAAGCTGCAGCGAGAATTGTGCTTCATGACTGGAATGAAG GTAAAATACCATATTTTACACTGCCGCCTAAAAGAGATGCTGGGGAGGACTEST: gi|87155945|gb|DY400734.1|DY400734
genomic: AGTGGATGTTGAAGCTGCAGCGAGAATTGTGCTTCATGACTGGAATGAAGgtatgcctga ... ttgtttttagGTAAAATACCATATTTTACACTGCCGCCTAAAAGAGATGCTGGGGAGGACT
EST: AGTGGATGTTGAAGCTGCAGCGAGAATTGTGCTTCATGACTGGAATGAAG GTAAAATACCATATTTTACACTGCCGCCTAAAAGAGATGCTGGGGAGGACTEST: gi|60399377|gb|DN232191.1|DN232191
genomic: AGTGGATGTTGAAGCTGCAGCGAGAATTGTGCTTCATGACTGGAATGAAGgtatgcctga ... ttgtttttagGTAAAATACCATATTTTACACTGCCGCCTAAAAGAGATGCTGGGGAGGACT
EST: AGTGGATGTTGAAGCTGCAGCGAGAATTGTGCTTCATGACTGGAATGAAG GTAAAATACCATATTTTACACTGCCGCCTAAAAGAGATGCTGGGGAAGACTEST: gi|87155835|gb|DY400624.1|DY400624
genomic: AGTGGATGTTGAAGCTGCAGCGAGAATTGTGCTTCATGACTGGAATGAAGgtatgcctga ... ttgtttttagGTAAAATACCATATTTTACACTGCCGCCTAAAAGAGATGCTGGGGAGGACT
EST: AGTGGATGTTGAAGCTGCAGCGAGAATTGTGCTTCATGACTGGAATGAAG GTAAAATACCATATTTTACACTGCCGCCTAAAAGAGATGCTGGGGAGGACTEST: gi|211206904|gb|FL385657.1|FL385657
genomic: AGTGGATGTTGAAGCTGCAGCGAGAATTGTGCTTCATGACTGGAATGAAGgtatgcctga ... ttgtttttagGTAAAATACCATATTTTACACTGCCGCCTAAAAGAGATGCTGGGGAGGACT
EST: AGTGGATGTTGAAGCTGCAGCGAGAATTGTGCTTCATGACTGGAATGAAG GTAAAATACCATATTTTACACTGCCGCCTAAAAEST: gi|22521457|gb|BU080268.1|BU080268
genomic: AGTGGATGTTGAAGCTGCAGCGAGAATTGTGCTTCATGACTGGAATGAAGgtatgcctga ... ttgtttttagGTAAAATACCATATTTTACACTGCCGCCTAAAA
EST: AGTGGATGTTGAAGCTGCAGCGAGAATTGTGCTTCATGACTGGAATGAAG GTAAAATACCATATTTTACACTGCCGCCTAAAAGAGATGCTGGGGAGGACT
genomic: AGTGGATGTTGAAGCTGCAGCGAGAATTGTGCTTCATGACTGGAATGAAGgtatgcctga ... ttgtttttagGTAAAATACCATATTTTACACTGCCGCCTAAAAGAGATGCTGGGGAGGACT
ttgcccttaacgctgtaaattattgttactagtgacctgatcctcttgtttttagGTAAAATACCATATTTTACACTGCCGCCTAAAAGAGATGCTGGGGAGGACTCAGATGCAGTGATTATATCCGAGGATGGGAAAGAATTTAATATCGATGA
tcctcttgttttt CT-rich tract
taaattattgttacta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgcctgatttttttgcccttaacgctgtaaattattgttactagtgacctgatcctcttgtttttagGTAAAATACCATATTTTACACTGCCGCCTAAAAGAGATGCTGGGGAGGACTCAGATGCAGTGATTATATCCGAGGATGGGAAAGAATTTAATATCGATGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA