1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtatatttgaataatttctgttctgtcaattaactcgtttcattcctccccctttagcatcctcatacaagttctgacacatctcatcagGTAAGGAGTTCACTGAGCTTCGTGGTCTGCGTATAAAGACCCGTAACACACATGGAACTGGTTGCACATTAGCTTCATGTATTGCTGCTGAATTAGCAAA
species | Zea mays |
transcript | GRMZM2G401934_T02 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AGGCGGGGATATGCCAGATTCATCAGATGCAATTGATGTGTTATTTGATG GTAAGGAGTTCACTGAGCTTCGTGGTCTGCGTATAAAGACCCGTAACACACEST: gi|211117202|gb|FL096590.1|FL096590
genomic: AGGCGGGGATATGCCAGATTCATCAGATGCAATTGATGTGTTATTTGATGgtatatttga ... atctcatcagGTAAGGAGTTCACTGAGCTTCGTGGTCTGCGTATAAAGACCCGTAACACAC
EST: AGGCGGGGATATGCCAGATTCATCAGATGCAATTGATGTGTTATTTGATG GTAAGGAGTTCACTGAGCYTCGTGGTCTGCGTATAAAGACCCGTAACACAC
genomic: AGGCGGGGATATGCCAGATTCATCAGATGCAATTGATGTGTTATTTGATGgtatatttga ... atctcatcagGTAAGGAGTTCACTGAGCTTCGTGGTCTGCGTATAAAGACCCGTAACACAC
cgtttcattcctccccctttagcatcctcatacaagttctgacacatctcatcagGTAAGGAGTTCACTGAGCTTCGTGGTCTGCGTATAAAGACCCGTAACACACATGGAACTGGTTGCACATTAGCTTCATGTATTGCTGCTGAATTAGCAAA
ttctgac putative branch site (score: 4)
tctcatc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatatttgaataatttctgttctgtcaattaactcgtttcattcctccccctttagcatcctcatacaagttctgacacatctcatcagGTAAGGAGTTCACTGAGCTTCGTGGTCTGCGTATAAAGACCCGTAACACACATGGAACTGGTTGCACATTAGCTTCATGTATTGCTGCTGAATTAGCAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT