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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttcttacaaactctaactaatgaaaagctgacattttccaaagataaatactacatctgcaagagtacctttttcagGTTGCTGAAAATTTAATTCTTGAGAAAACATCATGTCCTTTGGGTGTCCTATTGGTTATTTTTGAGTCCAGGCCTGATGCCTTGGTCCAG

Basic information

species Zea mays
transcript GRMZM2G389416_T01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G389416_T01 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os05g38150.2 (Oryza sativa), 3'ss of exon 8
--------------------------------------gtgagttcttacaaactctaactaa---tgaaaagctgacattttccaaagataaatactacatctgcaagagtaccttttt--cagGTTGCTGAAAATTTAATTCTTGAGAAAACATCATGTCCTTTGGGTGTCCTATTGGTTATTTTTGAGTCCAGGCCTGATGCCTTGGTCCAG
                                      |  |  |  ||  |  | | ||  |   |  | |    | ||  |  |   |||   | |  | |   |||| | ||  |||  |||||||||||  ||||| |||||||||||||||| || || || ||||| || ||  || ||||||||||| | |||||||||||||| |||
gtgaatgccagcctttttaatagaaactctttttaatagaaatctgctatgagatttcacagaaattctagattctagatgatatatccatagtgattttaacaaaaagatttcccctttgccagGTTGCTGATGATTTAGTTCTTGAGAAAACATCTTGCCCATTAGGTGTTCTCTTAATTGTTTTTGAGTCCCGACCTGATGCCTTGGTTCAG

upper sequence: GRMZM2G389416_T01 (Zea mays), 3'ss of exon 6
lower sequence: GLYMA07G16510.1 (Glycine max), 3'ss of exon 6
---gtgagttctta-caaactctaactaatgaaaagctgacatt--ttccaaagataaatact-acatctgcaa----gagtac--cttttt-----cagGTTGCTGAAAATTTAATTCTTGAGAAAACATCATGTCCTTTGGGTGTCCTATTGGTTATTTTTGAGTCCAGGCCTGATGCCTTGGTCCAG
   || | |   || |||| ||||   ||||  |     ||||   | | |  | | || ||| |  |  ||||    || |||  || |||     ||| | || || ||  | || || ||||||| |||||||||||||||||||||  ||||||| || |||||  | || |||||| | || |||
gcagttattcaataacaaattctagaaaatgttattaaaacatgcatcctattgctcaacactcattttggcaattctgattactgctctttgtgtccagCTAGCAGATAAACTCATCCTGGAGAAAATATCATGTCCTTTGGGTGTCCTCCTGGTTATATTCGAGTCTCGACCAGATGCCCTTGTTCAG

upper sequence: GRMZM2G389416_T01 (Zea mays), 3'ss of exon 6
lower sequence: GLYMA01G24530.1 (Glycine max), 3'ss of exon 10
----gtgagttcttacaaactctaactaatgaaa--agctgacattttccaaagataaatactacatctgcaag-----agtacctttttc-------agGTTGCTGAAAATTTAATTCTTGAGAAAACATCATGTCCTTTGGGTGTCCTATTGGTTATTTTTGAGTCCAGGCCTGATGCCTTGGTCCAG
         || |  ||||   | | |||||  |  |    | |  ||  |  | | || |||   | ||   |     | |   ||| ||       || | |  || ||  | || || ||||| | |||||||||||||||||||||  ||||||| ||||||||  | ||||||||| | || |||
agtcactgcttttaccaaaaaatgaataatgttattaaactatacattttattgctcaacactctttgtgacggttctgattgtttttctctttgtccagCTAGTAGATAAACTCATCCTGGAGAAGATATCATGTCCTTTGGGTGTCCTTCTGGTTATATTTGAGTCTCGACCTGATGCCCTTGTTCAG

upper sequence: GRMZM2G389416_T01 (Zea mays), 3'ss of exon 6
lower sequence: GLYMA03G12240.1 (Glycine max), 3'ss of exon 9
-gtgagttctta---caaactctaactaatgaaa--agctgacattttccaaagataaatact-------acatctgcaagagta-----cctttttcagGTTGCTGAAAATTTAATTCTTGAGAAAACATCATGTCCTTTGGGTGTCCTATTGGTTATTTTTGAGTCCAGGCCTGATGCCTTGGTCCAG
 || | | |||    ||||   | | |||||  |  |    | |  ||| |  | | || |||       |||  |   |  ||      | || ||||| | |  || ||  | || || ||||| |||||||||||||||||||||||  ||||||| ||||||||  | ||||||||| | || |||
tgtcactgctttgaccaaaaaatgaataatgttattaaactatacgttctattgttcaacactctttgtgacagttctgattgttgttctctttgttcagCTAGTAGATAAACTCATCCTGGAGAAGACATCATGTCCTTTGGGTGTCCTTCTGGTTATATTTGAGTCTCGACCTGATGCCCTTGTTCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaaagctgacattttccaaagataaatactacatctgcaagagtacctttttcagGTTGCTGAAAATTTAATTCTTGAGAAAACATCATGTCCTTTGGGTGTCCTATTGGTTATTTTTGAGTCCAGGCCTGATGCCTTGGTCCAG
   agctgac  putative branch site (score: 3)
                                           tacctttttc  putative PPT
                 aaagataaatacta  TA-rich tract