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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgtctttttcaaggtgaacagctcattatcaaagtcagttggagcaaggaaattaaattagacttctggtaacaatttcagGGAAAAGCGAGCCTGGCAGAACGTCTGCTCCATCCGCCAACGGGATTACCTCGCACAAGTTTTTATTTCTTGGTGTGCAAGTTACAGATTTTCTGTAATT

Basic information

species Zea mays
transcript GRMZM2G387310_T01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G387310_T01 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os02g03580.1 (Oryza sativa), 3'ss of exon 7
gtgcgtctttttcaaggtgaacagctcattatcaaagtcagttggagcaaggaaatta-aattagacttctggtaacaatttcagGGAAAAGCGAGCCTGGCAGAACGTCTGCTCCATCCGCCAACGGGATTACCTCGCACAAGTTTTTATTTCTTGGTGTGCAAGTTACAGATTTTCTGTAATT
||  ||||| | ||| || ||||        |||| ||   |||  ||||| || | | | |||  |||||| | | ||||||||||||||  |||| ||||||||| |||| |||||| ||||||||||||||||| ||||                                           
gtaagtcttctgcaatgtcaaca--------tcaaggttttttgt-gcaagtaattcacatttatgcttctgatcataatttcagGGAAAAATGAGCTTGGCAGAACATCTGGTCCATCTGCCAACGGGATTACCTCCCACAG------------------------------------------


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatcaaagtcagttggagcaaggaaattaaattagacttctggtaacaatttcagGGAAAAGCGAGCCTGGCAGAACGTCTGCTCCATCCGCCAACGGGATTACCTCGCACAAGTTTTTATTTCTTGGTGTGCAAGTTACAGATTTTCTGTAATT
                                        tggtaac  putative branch site (score: 2)
                       aaattaaattagactt  TA-rich tract