Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttaatataacattgcatataatctgtggttgccacgcccatttttattttattggttttggtacctaaaaggacaattacgtttcttcagGCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACCATCATCGGCGGTGGCGACTCTGTCGCTGCTGTCGAGAAGGCTGGGCTGG

Basic information

species Zea mays
transcript GRMZM2G382914_T03
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G382914_T03 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os02g07260.1 (Oryza sativa), 3'ss of exon 6
gttaatataacattgcatataatctgtggttgccacgcccatttttattttattggttttggtacctaaaaggacaattacgtttcttcagGCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACCATCATCGGCGGTGGCGACTCTGTCGCTGCTGTCGAGAAGGCTGGGCTGG
|||| || ||  |||  |   ||| |  | |  |  ||   || ||  |||     |||  ||  |||||    |  |    |||| |||||| |||||||||||| | ||||| ||||| ||||| ||||| | ||| ||||||||||| ||||| ||||| || ||||| |||||||||||||||||||
gttagtacaa--ttgactcacatccgctgatctcctgcattttctttcttt-----tttctgtcgctaaacattc--tcgtctttcatcagGCAATTGCCAAGAAGTTGGCTGATCTTACTACCACAAAGGGCGCCACGACCATCATCGGTGGTGGTGACTCCGTTGCTGCGGTCGAGAAGGCTGGGCTGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|61117370|gb|DN558331.1|DN558331
EST:     ACGGCCCCATGGGAGTGTTTGAGTTCCAGAAGTTTGCAGCTGGCACCGAG                         GCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
genomic: ACGGCCCCATGGGAGTGTTTGAGTTCCAGAAGTTTGCAGCTGGCACCGAGgttaatataa ... gtttcttcagGCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
EST: gi|211126857|gb|FL443351.1|FL443351
EST:     TGGGAGTGTTTGAGTTCGAGAAGTTTGCAGCTGGCACTGAG                         GCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
genomic: TGGGAGTGTTTGAGTTCCAGAAGTTTGCAGCTGGCACCGAGgttaatataa ... gtttcttcagGCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
EST: gi|18178873|gb|BM380083.1|BM380083
EST:     CGGCCNCCATGGGAGTGTTTGAGTTCCAGAAGTTTGCAGCTGGCACCGAG                         GCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
genomic: CGGCC-CCATGGGAGTGTTTGAGTTCCAGAAGTTTGCAGCTGGCACCGAGgttaatataa ... gtttcttcagGCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
EST: gi|211044128|gb|FL234528.1|FL234528
EST:     ACGGCCCCATGGGAGTGTTTGAGTTCGAGAAGTTTGCAGCTGGCACTGAG                         GCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACN
genomic: ACGGCCCCATGGGAGTGTTTGAGTTCCAGAAGTTTGCAGCTGGCACCGAGgttaatataa ... gtttcttcagGCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
EST: gi|211171103|gb|FL381648.1|FL381648
EST:     ACGGCCCCATGGGAGTGTTTGAGTTCGAGAAGTTTGCAGCTGGCACTGAG                         GCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
genomic: ACGGCCCCATGGGAGTGTTTGAGTTCCAGAAGTTTGCAGCTGGCACCGAGgttaatataa ... gtttcttcagGCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
EST: gi|61117389|gb|DN558350.1|DN558350
EST:     ACGGCCCCATGGGAGTGTTTGAGTTCCAGAAGTTTGCAGCTGGCACCGAG                         GCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
genomic: ACGGCCCCATGGGAGTGTTTGAGTTCCAGAAGTTTGCAGCTGGCACCGAGgttaatataa ... gtttcttcagGCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
EST: gi|84980417|gb|DW530766.1|DW530766
EST:     ACGGCCCCATGGGAGTGTTTGAGTTCCAGAAGTTTGCAGCTGGCACCGAG                         GCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
genomic: ACGGCCCCATGGGAGTGTTTGAGTTCCAGAAGTTTGCAGCTGGCACCGAGgttaatataa ... gtttcttcagGCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
EST: gi|211153112|gb|FL378522.1|FL378522
EST:     ACGGCCCCATGGGAGTGTTTGAGTTCGAGAAGTTTGCAGCTGGCACTGAG                         GCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
genomic: ACGGCCCCATGGGAGTGTTTGAGTTCCAGAAGTTTGCAGCTGGCACCGAGgttaatataa ... gtttcttcagGCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
EST: gi|29945361|gb|CB815600.1|CB815600
EST:     ACGGCCCCATGGGAGTGTTTGAGTTCCAGAAGTTTGCAGCTGGCACCGAG                         GCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
genomic: ACGGCCCCATGGGAGTGTTTGAGTTCCAGAAGTTTGCAGCTGGCACCGAGgttaatataa ... gtttcttcagGCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
EST: gi|21843580|gb|BQ704161.1|BQ704161
EST:     ACGGCCCCATGGGAGTGTTTGAGTTCGAGAAGTTTGCAGCTGGCACTGAG                         GCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
genomic: ACGGCCCCATGGGAGTGTTTGAGTTCCAGAAGTTTGCAGCTGGCACCGAGgttaatataa ... gtttcttcagGCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
EST: gi|61117372|gb|DN558333.1|DN558333
EST:     ACGGCCCCATGGGAGTGTTTGAGTTCCAGAAGTTTGCAGCTGGCACCGAG                         GCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
genomic: ACGGCCCCATGGGAGTGTTTGAGTTCCAGAAGTTTGCAGCTGGCACCGAGgttaatataa ... gtttcttcagGCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
EST: gi|32909025|gb|CF013837.1|CF013837
EST:     ACGGCCCCATGGGAGTGTTTGAGTTCCAGAAGTTTGCAGCTGGCACCGAG                         GCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
genomic: ACGGCCCCATGGGAGTGTTTGAGTTCCAGAAGTTTGCAGCTGGCACCGAGgttaatataa ... gtttcttcagGCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
EST: gi|29945580|gb|CB815712.1|CB815712
EST:     ACGGCCCCATGGGAGTGTTTGAGTTCCAGAAGTTTGCAGCTGGCACCGAG                         GCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
genomic: ACGGCCCCATGGGAGTGTTTGAGTTCCAGAAGTTTGCAGCTGGCACCGAGgttaatataa ... gtttcttcagGCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
EST: gi|37394374|gb|CF634460.1|CF634460
EST:     ACGGCCCCATGGGAGTGTTTGAGTTCGAGAAGTTTGCAGCTGGCACTGAG                         GCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
genomic: ACGGCCCCATGGGAGTGTTTGAGTTCCAGAAGTTTGCAGCTGGCACCGAGgttaatataa ... gtttcttcagGCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
EST: gi|9824931|gb|BE575028.1|BE575028
EST:     ACGGCCCCATGGGAGTGTTTGAGTTCGAGAAGTTTGCAGCTGGCACTGAG                         GCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
genomic: ACGGCCCCATGGGAGTGTTTGAGTTCCAGAAGTTTGCAGCTGGCACCGAGgttaatataa ... gtttcttcagGCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
EST: gi|211034531|gb|FL384618.1|FL384618
EST:     ACGGCCCCATGGGAGTGTTTGAGTTCCAGAAGTTTGCAGCTGGCACCGAG                         GCGATTGACAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
genomic: ACGGCCCCATGGGAGTGTTTGAGTTCCAGAAGTTTGCAGCTGGCACCGAGgttaatataa ... gtttcttcagGCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
EST: gi|111990900|gb|EE332336.1|EE332336
EST:     ACGGCCCCATGGGAGTGTTTGAGTTCCAGAAGTTTGCAGCTGGCACCGAG                         GCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
genomic: ACGGCCCCATGGGAGTGTTTGAGTTCCAGAAGTTTGCAGCTGGCACCGAGgttaatataa ... gtttcttcagGCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
EST: gi|21987634|gb|BQ779162.1|BQ779162
EST:     ACGGCCCCATGGGAGTGTTTGAGTTCGAGAAGTTTGCAGCTGGCACTGAG                         GCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGGGTCACTACC
genomic: ACGGCCCCATGGGAGTGTTTGAGTTCCAGAAGTTTGCAGCTGGCACCGAGgttaatataa ... gtttcttcagGCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
EST: gi|61117376|gb|DN558337.1|DN558337
EST:     ACGGCCCCATGGGAGTGTTTGAGTTCCAGAAGTTTGCAGCTGGCACCGAG                         GCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
genomic: ACGGCCCCATGGGAGTGTTTGAGTTCCAGAAGTTTGCAGCTGGCACCGAGgttaatataa ... gtttcttcagGCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
EST: gi|60343932|gb|DN210905.1|DN210905
EST:     ACGGCCCCATGGGAGTGTTTGAGTTCCAGAAGTTTGCAGCTGGCACCGAG                         GCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
genomic: ACGGCCCCATGGGAGTGTTTGAGTTCCAGAAGTTTGCAGCTGGCACCGAGgttaatataa ... gtttcttcagGCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
EST: gi|61117375|gb|DN558336.1|DN558336
EST:     ACGGCCCCATGGGAGTGTTTGAGTTCCAGAAGTTTGCAGCTGGCACCGAG                         GCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
genomic: ACGGCCCCATGGGAGTGTTTGAGTTCCAGAAGTTTGCAGCTGGCACCGAGgttaatataa ... gtttcttcagGCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
EST: gi|16919634|gb|BM074288.1|BM074288
EST:     ACGGCCCCATGGGAGTGTTTGAGTTCCAGAAGTTTGCAGCTGGCACCGAG                         GCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
genomic: ACGGCCCCATGGGAGTGTTTGAGTTCCAGAAGTTTGCAGCTGGCACCGAGgttaatataa ... gtttcttcagGCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
EST: gi|32865744|gb|CF005426.1|CF005426
EST:     ACGGCCCCATGGGAGTGTTTGAGTTCCAGAAGTTTGCAGCTGGCACCGAG                         GCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
genomic: ACGGCCCCATGGGAGTGTTTGAGTTCCAGAAGTTTGCAGCTGGCACCGAGgttaatataa ... gtttcttcagGCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
EST: gi|211224584|gb|FL216898.1|FL216898
EST:     ACGGCCCCATGGGAGTGTTTGAGTTCGAGAAGTTTGCAGCTGGCACTGAG                         GCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
genomic: ACGGCCCCATGGGAGTGTTTGAGTTCCAGAAGTTTGCAGCTGGCACCGAGgttaatataa ... gtttcttcagGCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
EST: gi|61117388|gb|DN558349.1|DN558349
EST:     ACGGCCCCATGGGAGTGTTTGAGTTCCAGAAGTTTGCAGCTGGCACCGAG                         GCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
genomic: ACGGCCCCATGGGAGTGTTTGAGTTCCAGAAGTTTGCAGCTGGCACCGAGgttaatataa ... gtttcttcagGCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
EST: gi|31358967|gb|CD443324.1|CD443324
EST:     ACGGCCCCATGGGAGTGTTTGAGTTCGAGAAGTTTGCAGCTGGCACTGAG                         GCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
genomic: ACGGCCCCATGGGAGTGTTTGAGTTCCAGAAGTTTGCAGCTGGCACCGAGgttaatataa ... gtttcttcagGCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
EST: gi|32907707|gb|CF012520.1|CF012520
EST:     ACGGCCCCATGGGAGTGTTTGAGTTCCAGAAGTTTGCAGCTGGCACCGAG                         GCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
genomic: ACGGCCCCATGGGAGTGTTTGAGTTCCAGAAGTTTGCAGCTGGCACCGAGgttaatataa ... gtttcttcagGCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
EST: gi|211481605|gb|FL376532.1|FL376532
EST:     ACGGCCCCATGGGAGTGTTTGAGTTCGAGAAGTTTGCAGCTGGCACTGAG                         GCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
genomic: ACGGCCCCATGGGAGTGTTTGAGTTCCAGAAGTTTGCAGCTGGCACCGAGgttaatataa ... gtttcttcagGCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
EST: gi|47961826|gb|CN844535.1|CN844535
EST:     ACGGCCCCATGGGAGTGTTTGAGTTCCAGAAGTTTGCAGCTGGCACCGAG                         GCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
genomic: ACGGCCCCATGGGAGTGTTTGAGTTCCAGAAGTTTGCAGCTGGCACCGAGgttaatataa ... gtttcttcagGCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
EST: gi|21843195|gb|BQ703776.1|BQ703776
EST:     ACGGCCCCATGGGAGTGTTTGAGTTCGAGAAGTTTGCAGCTGGCACTGAG                         GCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
genomic: ACGGCCCCATGGGAGTGTTTGAGTTCCAGAAGTTTGCAGCTGGCACCGAGgttaatataa ... gtttcttcagGCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
EST: gi|61117377|gb|DN558338.1|DN558338
EST:     ACGGCCCCATGGGAGTGTTTGAGTTCCAGAAGTTTGCAGCTGGCACCGAG                         GCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
genomic: ACGGCCCCATGGGAGTGTTTGAGTTCCAGAAGTTTGCAGCTGGCACCGAGgttaatataa ... gtttcttcagGCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
EST: gi|61117380|gb|DN558341.1|DN558341
EST:     ACGGCCCCATGGGAGTGTTTGAGTTCCAGAAGTTTGCAGCTGGCACCGAG                         GCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
genomic: ACGGCCCCATGGGAGTGTTTGAGTTCCAGAAGTTTGCAGCTGGCACCGAGgttaatataa ... gtttcttcagGCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
EST: gi|148934220|gb|EC878241.2|EC878241
EST:     ACGGCCCCATGGGAGTGTTTGAGTTCCAGAAGTTTGCAGCTGGCACCGAG                         GCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
genomic: ACGGCCCCATGGGAGTGTTTGAGTTCCAGAAGTTTGCAGCTGGCACCGAGgttaatataa ... gtttcttcagGCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
EST: gi|37387556|gb|CF630975.1|CF630975
EST:     ACGGCCCCATGGGAGTGTTTGAGTTCGAGAAGTTTGCAGCTGGCACTGAG                         GCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
genomic: ACGGCCCCATGGGAGTGTTTGAGTTCCAGAAGTTTGCAGCTGGCACCGAGgttaatataa ... gtttcttcagGCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
EST: gi|61117367|gb|DN558328.1|DN558328
EST:     ACGGCCCCATGGGAGTGTTTGAGTTCCAGAAGTTTGCAGCTGGCACCGAG                         GCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
genomic: ACGGCCCCATGGGAGTGTTTGAGTTCCAGAAGTTTGCAGCTGGCACCGAGgttaatataa ... gtttcttcagGCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
EST: gi|84980844|gb|DW531193.1|DW531193
EST:     ACGGCCCCATGGGAGTGTTTGAGTTCCAGAAGTTTGCAGCTGGCACCGAG                         GCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
genomic: ACGGCCCCATGGGAGTGTTTGAGTTCCAGAAGTTTGCAGCTGGCACCGAGgttaatataa ... gtttcttcagGCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
EST: gi|26457504|gb|CA829087.1|CA829087
EST:     ACGGCCCCATGGGAGTGTTTGAGTTCGAGAAGTTTGCAGCTGGCACTGAG                         GCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
genomic: ACGGCCCCATGGGAGTGTTTGAGTTCCAGAAGTTTGCAGCTGGCACCGAGgttaatataa ... gtttcttcagGCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
EST: gi|22936004|gb|BU572279.1|BU572279
EST:     ACGGCCCCATGGGAGTGTTTGAGTTCGAGAAGTTTGCAGCTGGCACTGAG                         GCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGNGTCACTACC
genomic: ACGGCCCCATGGGAGTGTTTGAGTTCCAGAAGTTTGCAGCTGGCACCGAGgttaatataa ... gtttcttcagGCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
EST: gi|32916467|gb|CF021279.1|CF021279
EST:     ACGGCCCCATGGGAGTGTTTGAGTTCCAGAAGTTTGCAGCTGGCACCGAG                         GCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
genomic: ACGGCCCCATGGGAGTGTTTGAGTTCCAGAAGTTTGCAGCTGGCACCGAGgttaatataa ... gtttcttcagGCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
EST: gi|61117392|gb|DN558353.1|DN558353
EST:     ACGGCCCCATGGGAGTGTTTGAGTTCCAGAAGTTTGCAGCTGGCACCGAG                         GCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
genomic: ACGGCCCCATGGGAGTGTTTGAGTTCCAGAAGTTTGCAGCTGGCACCGAGgttaatataa ... gtttcttcagGCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
EST: gi|18179699|gb|BM380909.1|BM380909
EST:     CGCGCCCCATGGGAGTGTTTGAGTTCCAGAAGTTTGCAGCTGGCACCGAG                         GCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
genomic: CG-GCCCCATGGGAGTGTTTGAGTTCCAGAAGTTTGCAGCTGGCACCGAGgttaatataa ... gtttcttcagGCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
EST: gi|211199180|gb|FL385143.1|FL385143
EST:     ACGGCCCCATGGGAGTGTTTGAGTTCCAGAAGTTTGCAGCTGGCACCGAG                         GCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
genomic: ACGGCCCCATGGGAGTGTTTGAGTTCCAGAAGTTTGCAGCTGGCACCGAGgttaatataa ... gtttcttcagGCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
EST: gi|61117391|gb|DN558352.1|DN558352
EST:     ACGGCCCCATGGGAGTGTTTGAGTTCCAGAAGTTTGCAGCTGGCACCGAG                         GCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
genomic: ACGGCCCCATGGGAGTGTTTGAGTTCCAGAAGTTTGCAGCTGGCACCGAGgttaatataa ... gtttcttcagGCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
EST: gi|18181033|gb|BM382243.1|BM382243
EST:     CGGCCCCAATGGGAGTGTTTGAGTTCCAGAAGTTTGCAGCTGGCACCGAG                         GCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
genomic: CGGCCCC-ATGGGAGTGTTTGAGTTCCAGAAGTTTGCAGCTGGCACCGAGgttaatataa ... gtttcttcagGCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
EST: gi|31352972|gb|CD437329.1|CD437329
EST:     ACGGCCCCATGGGAGTGTTTGAGTTCGAGAAGTTTGCAGCTGGCACTGAG                         GCGATTGCCCAGAAGCTAGCTGAGCT
genomic: ACGGCCCCATGGGAGTGTTTGAGTTCCAGAAGTTTGCAGCTGGCACCGAGgttaatataa ... gtttcttcagGCGATTGCCAAGAAGCTAGCTGAGCT
EST: gi|61117390|gb|DN558351.1|DN558351
EST:     ACGGCCCCATGGGAGTGTTTGAGTTCCAGAAGTTTGCAGCTGGCACCGAG                         GCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
genomic: ACGGCCCCATGGGAGTGTTTGAGTTCCAGAAGTTTGCAGCTGGCACCGAGgttaatataa ... gtttcttcagGCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
EST: gi|32916455|gb|CF021267.1|CF021267
EST:     ACGGCCCCATGGGAGTGTTTGAGTTCCAGAAGTTTGCAGCTGGCACCGAG                         GCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
genomic: ACGGCCCCATGGGAGTGTTTGAGTTCCAGAAGTTTGCAGCTGGCACCGAGgttaatataa ... gtttcttcagGCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
EST: gi|211082875|gb|FL417817.1|FL417817
EST:     ACGGCCCCATGGGAGTGTTTGAGTTCCANAAGTTTGCAGCTGGCACCGAG                         GCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
genomic: ACGGCCCCATGGGAGTGTTTGAGTTCCAGAAGTTTGCAGCTGGCACCGAGgttaatataa ... gtttcttcagGCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
EST: gi|211233918|gb|FL394222.1|FL394222
EST:     ACGGCCCCATGGGAGTGTTYGAGTTCNAGAAGTTTGCAGCTGGCACTGAG                         GCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
genomic: ACGGCCCCATGGGAGTGTTTGAGTTCCAGAAGTTTGCAGCTGGCACCGAGgttaatataa ... gtttcttcagGCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
EST: gi|31440881|gb|CD510312.1|CD510312
EST:     ACGGCCCCATGGGAGTGTTTGAGTTCCAGAAGTTTGCAGCTGGCACCGAG                         GCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
genomic: ACGGCCCCATGGGAGTGTTTGAGTTCCAGAAGTTTGCAGCTGGCACCGAGgttaatataa ... gtttcttcagGCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
EST: gi|31909249|gb|CD650824.1|CD650824
EST:     ACGGCCCCATGGGAGTGTTTGAGTTCCAGAAGTTTGCAGCTGGCACCGAG                         GCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
genomic: ACGGCCCCATGGGAGTGTTTGAGTTCCAGAAGTTTGCAGCTGGCACCGAGgttaatataa ... gtttcttcagGCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
EST: gi|211046002|gb|FL422503.1|FL422503
EST:     ACGGCCCCATGGGAGTGTTTGAGTTCCANAAGTTTGCAGCTGGCACCGAG                         GCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
genomic: ACGGCCCCATGGGAGTGTTTGAGTTCCAGAAGTTTGCAGCTGGCACCGAGgttaatataa ... gtttcttcagGCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
EST: gi|61117373|gb|DN558334.1|DN558334
EST:     ACGGCCCCATGGGAGTGTTTGAGTTCCAGAAGTTTGCAGCTGGCACCGAG                         GCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
genomic: ACGGCCCCATGGGAGTGTTTGAGTTCCAGAAGTTTGCAGCTGGCACCGAGgttaatataa ... gtttcttcagGCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
EST: gi|149073263|gb|EE161553.2|EE161553
EST:     ACGGCCCCATGGGAGTGTTTGAGTTCCAGAAGTTTGCAGCTGGCACCGAG                         GCGATTGCCAAGAAGCTAGCTGAGCTTACAACCCCGAAGGGTGTCACTACC
genomic: ACGGCCCCATGGGAGTGTTTGAGTTCCAGAAGTTTGCAGCTGGCACCGAGgttaatataa ... gtttcttcagGCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
EST: gi|28984418|gb|BQ539068.2|BQ539068
EST:     ACGGCCCCATGGGAGTGTTTGAGTTCCAGAAGTTTGCAGCTGGCACCGAG                         GCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
genomic: ACGGCCCCATGGGAGTGTTTGAGTTCCAGAAGTTTGCAGCTGGCACCGAGgttaatataa ... gtttcttcagGCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
EST: gi|31406031|gb|CD484763.1|CD484763
EST:     ACGGCCCCATGGGAGTGTTTGAGTTCCAGAAGTTTGCAGCTGGCACCGAG                         GCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
genomic: ACGGCCCCATGGGAGTGTTTGAGTTCCAGAAGTTTGCAGCTGGCACCGAGgttaatataa ... gtttcttcagGCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
EST: gi|21843572|gb|BQ704153.1|BQ704153
EST:     ACGGCCCCATGGGAGTGTTTGAGTTCGAGAAGTTTGCAGCTGGCACTGAG                         GCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
genomic: ACGGCCCCATGGGAGTGTTTGAGTTCCAGAAGTTTGCAGCTGGCACCGAGgttaatataa ... gtttcttcagGCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
EST: gi|211459375|gb|FL423332.1|FL423332
EST:     ACGGCCCCATGGGAGTGTTTGAGTTCGAGAAGTTAGCAGCTGGCACTGAG                         GCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
genomic: ACGGCCCCATGGGAGTGTTTGAGTTCCAGAAGTTTGCAGCTGGCACCGAGgttaatataa ... gtttcttcagGCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
EST: gi|61117383|gb|DN558344.1|DN558344
EST:     ACGGCCCCATGGGAGTGTTTGAGTTCCAGAAGTTTGCAGCTGGCACCGAG                         GCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
genomic: ACGGCCCCATGGGAGTGTTTGAGTTCCAGAAGTTTGCAGCTGGCACCGAGgttaatataa ... gtttcttcagGCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
EST: gi|211367760|gb|FL457536.1|FL457536
EST:     ACGGCCCCATGGGAGTGTTTGAGTTCCAGAAGTTTGCAGCTGGCACCGAG                         GCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
genomic: ACGGCCCCATGGGAGTGTTTGAGTTCCAGAAGTTTGCAGCTGGCACCGAGgttaatataa ... gtttcttcagGCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
EST: gi|61117374|gb|DN558335.1|DN558335
EST:     ACGGCCCCATGGGAGTGTTTGAGTTCCAGAAGTTTGCAGCTGGCACCGAG                         GCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
genomic: ACGGCCCCATGGGAGTGTTTGAGTTCCAGAAGTTTGCAGCTGGCACCGAGgttaatataa ... gtttcttcagGCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
EST: gi|14243537|gb|BG841279.2|BG841279
EST:     GGAGTGTTTGAGTTCCAGAAGTTTGCAGCTGGCACCGAG                         GCGATTGCCAAGAAGCTAGCTGAGCTTACAGCCACGAAGGGTGTCACTACC
genomic: GGAGTGTTTGAGTTCCAGAAGTTTGCAGCTGGCACCGAGgttaatataa ... gtttcttcagGCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
EST: gi|61117379|gb|DN558340.1|DN558340
EST:     ACGGCCCCATGGGAGTGTTTGAGTTCCAGAAGTTTGCAGCTGGCACCGAG                         GCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
genomic: ACGGCCCCATGGGAGTGTTTGAGTTCCAGAAGTTTGCAGCTGGCACCGAGgttaatataa ... gtttcttcagGCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
EST: gi|61117366|gb|DN558327.1|DN558327
EST:     ACGGCCCCATGGGAGTGTTTGAGTTCCAGAAGTTTGCAGCTGGCACCGAG                         GCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
genomic: ACGGCCCCATGGGAGTGTTTGAGTTCCAGAAGTTTGCAGCTGGCACCGAGgttaatataa ... gtttcttcagGCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
EST: gi|61117378|gb|DN558339.1|DN558339
EST:     ACGGCCCCATGGGAGTGTTTGAGTTCCAGAAGTTTGCAGCTGGCACCGAG                         GCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
genomic: ACGGCCCCATGGGAGTGTTTGAGTTCCAGAAGTTTGCAGCTGGCACCGAGgttaatataa ... gtttcttcagGCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
EST: gi|61117368|gb|DN558329.1|DN558329
EST:     ACGGCCCCATGGGAGTGTTTGAGTTCCAGAAGTTTGCAGCTGGCACCGAG                         GCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
genomic: ACGGCCCCATGGGAGTGTTTGAGTTCCAGAAGTTTGCAGCTGGCACCGAGgttaatataa ... gtttcttcagGCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
EST: gi|32907706|gb|CF012519.1|CF012519
EST:     ACGGCCCCATGGGAGTGTTTGAGTTCCAGAAGTTTGCAGCTGGCACCGAG                         GCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
genomic: ACGGCCCCATGGGAGTGTTTGAGTTCCAGAAGTTTGCAGCTGGCACCGAGgttaatataa ... gtttcttcagGCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
EST: gi|51592613|gb|CV071759.1|CV071759
EST:     ACGGCCCCATGGGAGTGTTTGAGTTCCAGAAGTTTGCAGCTGGCACCGAG                         GCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
genomic: ACGGCCCCATGGGAGTGTTTGAGTTCCAGAAGTTTGCAGCTGGCACCGAGgttaatataa ... gtttcttcagGCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
EST: gi|37395052|gb|CF634805.1|CF634805
EST:     ACGGCCCCATGGGAGTGTTTGAGTTCGAGAAGTTTGCAGCTGGCACTGAG                         GCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
genomic: ACGGCCCCATGGGAGTGTTTGAGTTCCAGAAGTTTGCAGCTGGCACCGAGgttaatataa ... gtttcttcagGCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
EST: gi|61117369|gb|DN558330.1|DN558330
EST:     ACGGCCCCATGGGAGTGTTTGAGTTCCAGAAGTTTGCAGCTGGCACCGAG                         GCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
genomic: ACGGCCCCATGGGAGTGTTTGAGTTCCAGAAGTTTGCAGCTGGCACCGAGgttaatataa ... gtttcttcagGCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
EST: gi|60354439|gb|DN221412.1|DN221412
EST:     ACGGCCCCATGGGAGTGTTTGAGTTCCAGAAGTTTGCAGCTGGCACCGAG                         GCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
genomic: ACGGCCCCATGGGAGTGTTTGAGTTCCAGAAGTTTGCAGCTGGCACCGAGgttaatataa ... gtttcttcagGCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
EST: gi|29543492|gb|CB603874.1|CB603874
EST:     ACGGCCCCATGGGAGTGTTTGAGTTCCAGAAGTTTGCAGCTGGCACCGAG                         GCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
genomic: ACGGCCCCATGGGAGTGTTTGAGTTCCAGAAGTTTGCAGCTGGCACCGAGgttaatataa ... gtttcttcagGCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
EST: gi|61117371|gb|DN558332.1|DN558332
EST:     ACGGCCCCATGGGAGTGTTTGAGTTCCAGAAGTTTGCAGCTGGCACCGAG                         GCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
genomic: ACGGCCCCATGGGAGTGTTTGAGTTCCAGAAGTTTGCAGCTGGCACCGAGgttaatataa ... gtttcttcagGCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
EST: gi|71316995|gb|DR795182.1|DR795182
EST:     ACGGCCCCATGGGAGTGTTTGAGTTCCAGAAGTTTGCAGCTGGCACCGAG                         GCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC
genomic: ACGGCCCCATGGGAGTGTTTGAGTTCCAGAAGTTTGCAGCTGGCACCGAGgttaatataa ... gtttcttcagGCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcccatttttattttattggttttggtacctaaaaggacaattacgtttcttcagGCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACCATCATCGGCGGTGGCGACTCTGTCGCTGCTGTCGAGAAGGCTGGGCTGG
                           acctaaa  putative branch site (score: 3)
                                            cgtttcttc  putative PPT
     tttttattttattggt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gttaatataacattgcatataatctgtggttgccacgcccatttttattttattggttttggtacctaaaaggacaattacgtttcttcagGCGATTGCCAAGAAGCTAGCTGAGCTTACAACCACGAAGGGTGTCACTACCATCATCGGCGGTGGCGACTCTGTCGCTGCTGTCGAGAAGGCTGGGCTGG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT